Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Biol.Unit 1 - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Biol.Unit 1 - manually
Biol.Unit 1 - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  KIDNEY BEAN PURPLE ACID PHOSPHATASE
 
Authors :  T. Klabunde, N. Strater, B. Krebs
Date :  20 Feb 95  (Deposition) - 14 Oct 96  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B,C  (2x)
Biol. Unit 2:  A,D  (2x)
Keywords :  Purple Acid Phosphatase, Hydrolase (Phosphoric Monoester) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Klabunde, N. Strater, R. Frohlich, H. Witzel, B. Krebs
Mechanism Of Fe(Iii)-Zn(Ii) Purple Acid Phosphatase Based O Crystal Structures.
J. Mol. Biol. V. 259 737 1996
PubMed-ID: 8683579  |  Reference-DOI: 10.1006/JMBI.1996.0354
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PURPLE ACID PHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.3.2
    Organism Scientific: PHASEOLUS VULGARIS
    Organism Taxid: 3885

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x):  BC 
Biological Unit 2 (2x): A  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 28)

Asymmetric Unit (3, 28)
No.NameCountTypeFull Name
1FE4Ligand/IonFE (III) ION
2NAG20Ligand/IonN-ACETYL-D-GLUCOSAMINE
3ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2NAG20Ligand/IonN-ACETYL-D-GLUCOSAMINE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 20)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2NAG20Ligand/IonN-ACETYL-D-GLUCOSAMINE
3ZN-1Ligand/IonZINC ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:81 , TYR D:24 , ASP D:50 , GLU D:51BINDING SITE FOR RESIDUE NAG A 433A
02AC2SOFTWARETYR A:24 , ARG A:108 , ASN A:109BINDING SITE FOR RESIDUE NAG A 434A
03AC3SOFTWAREMET A:11 , ASP A:16 , ASN A:143 , SER A:147 , ARG A:188BINDING SITE FOR RESIDUE NAG A 435A
04AC4SOFTWAREPRO A:208 , GLU A:209 , ASN A:211BINDING SITE FOR RESIDUE NAG A 436A
05AC5SOFTWAREASN A:396 , HIS A:399BINDING SITE FOR RESIDUE NAG A 437A
06AC6SOFTWARETYR B:24 , ASP B:50 , GLU B:51 , ASN B:81BINDING SITE FOR RESIDUE NAG B 433A
07AC7SOFTWARETYR B:24 , ARG B:108 , ASN B:109BINDING SITE FOR RESIDUE NAG B 434A
08AC8SOFTWAREASP B:16 , ASN B:143 , SER B:147 , ARG B:188BINDING SITE FOR RESIDUE NAG B 435A
09AC9SOFTWAREPRO B:208 , GLU B:209 , ASN B:211BINDING SITE FOR RESIDUE NAG B 436A
10ATAUNKNOWNFE A:438 , ZN A:439NULL
11ATBUNKNOWNFE B:438 , ZN B:439NULL
12ATCUNKNOWNFE C:438 , ZN C:439NULL
13ATDUNKNOWNFE D:438 , ZN D:439NULL
14BC1SOFTWAREASN B:396 , HIS B:399BINDING SITE FOR RESIDUE NAG B 437A
15BC2SOFTWARETYR C:24 , ASP C:50 , GLU C:51 , ASN C:81BINDING SITE FOR RESIDUE NAG C 433A
16BC3SOFTWARETYR C:24 , ARG C:108 , ASN C:109BINDING SITE FOR RESIDUE NAG C 434A
17BC4SOFTWAREMET C:11 , ASP C:16 , ASN C:143 , SER C:147 , ARG C:188BINDING SITE FOR RESIDUE NAG C 435A
18BC5SOFTWAREPRO C:208 , GLU C:209 , ASN C:211BINDING SITE FOR RESIDUE NAG C 436A
19BC6SOFTWAREASN C:396 , HIS C:399BINDING SITE FOR RESIDUE NAG C 437A
20BC7SOFTWARETYR A:24 , ASP A:50 , GLU A:51 , ASN D:81BINDING SITE FOR RESIDUE NAG D 433A
21BC8SOFTWARETYR D:24 , ARG D:108 , ASN D:109BINDING SITE FOR RESIDUE NAG D 434A
22BC9SOFTWAREMET D:11 , ASP D:16 , ASN D:143 , SER D:147 , ARG D:188BINDING SITE FOR RESIDUE NAG D 435A
23CC1SOFTWAREPRO D:208 , GLU D:209 , ASN D:211BINDING SITE FOR RESIDUE NAG D 436A
24CC2SOFTWAREARG C:397 , ASN D:396 , HIS D:399BINDING SITE FOR RESIDUE NAG D 437A
25CC3SOFTWAREASP A:135 , ASP A:164 , TYR A:167 , HIS A:325 , ZN A:439BINDING SITE FOR RESIDUE FE A 438
26CC4SOFTWAREASP A:164 , ASN A:201 , HIS A:286 , HIS A:323 , FE A:438BINDING SITE FOR RESIDUE ZN A 439
27CC5SOFTWAREASP B:135 , ASP B:164 , TYR B:167 , HIS B:325 , ZN B:439BINDING SITE FOR RESIDUE FE B 438
28CC6SOFTWAREASP B:164 , ASN B:201 , HIS B:286 , HIS B:323 , FE B:438BINDING SITE FOR RESIDUE ZN B 439
29CC7SOFTWAREASP C:135 , ASP C:164 , TYR C:167 , HIS C:325 , ZN C:439BINDING SITE FOR RESIDUE FE C 438
30CC8SOFTWAREASP C:164 , ASN C:201 , HIS C:286 , HIS C:323 , FE C:438BINDING SITE FOR RESIDUE ZN C 439
31CC9SOFTWAREASP D:135 , ASP D:164 , TYR D:167 , HIS D:325 , ZN D:439BINDING SITE FOR RESIDUE FE D 438
32DC1SOFTWAREASP D:164 , ASN D:201 , HIS D:286 , HIS D:323 , FE D:438BINDING SITE FOR RESIDUE ZN D 439

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:345 -A:345
2B:345 -C:345
3D:345 -D:345

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gln A:374 -Pro A:375
2Gln B:374 -Pro B:375
3Gln C:374 -Pro C:375
4Gln D:374 -Pro D:375

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KBP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1KBP)

(-) Exons   (0, 0)

(no "Exon" information available for 1KBP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:424
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455    
           PPAF_PHAVU    36 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 459
               SCOP domains d1kbpa1 A:9-120 Purple acid phosphatase, N-terminal domain                                                      d1kbpa2 A:121-432 Plant purple acid phosphatase, catalytic domain                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -----------------1kbpA01 A:26-122 Purple acid phosphatase, domain1                                                1kbpA02 A:123-432  [code=3.60.21.10, no name defined]                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeee.......eeeeeee.......eeeeee......eeee.eee..........eeeeeee.......eeeeee......eeeeee..........eeeeee......hhhhhhhhhhhh......eeee......hhh.hhh.hhhhhhhhhhhhhhh..........hhh....hhh......hhhhhh....hhh........eeee...eeeee...........hhhhhhhhhhhh.......eeeee................hhhhhhhhhhhhh....eeee.....eeee........................eeeee....................eeeee...eeeeeee....eeeeeeee.......eeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbp A   9 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428    


Chain B from PDB  Type:PROTEIN  Length:424
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:424
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455    
           PPAF_PHAVU    36 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 459
               SCOP domains d1kbpb1 B:9-120 Purple acid phosphatase, N-terminal domain                                                      d1kbpb2 B:121-432 Plant purple acid phosphatase, catalytic domain                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -----------------1kbpB01 B:26-122 Purple acid phosphatase, domain1                                                1kbpB02 B:123-432  [code=3.60.21.10, no name defined]                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeee.......eeeeeee.......eeeeee......eeee.eee..........eeeeeee.......eeeeee......eeeeee..........eeeeee......hhhhhhhhhhhh......eeee......hhh.hhh.hhhhhhhhhhhhhhh..........hhh....hhh......hhhhhh....hhh........eeee...eeeee...........hhhhhhhhhhhh.......eeeee................hhhhhhhhhhhhh....eeee.....eeee........................eeeee....................eeeee...eeeeeee....eeeeeeee.......eeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbp B   9 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428    


Chain C from PDB  Type:PROTEIN  Length:424
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:424
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455    
           PPAF_PHAVU    36 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 459
               SCOP domains d1kbpc1 C:9-120 Purple acid phosphatase, N-terminal domain                                                      d1kbpc2 C:121-432 Plant purple acid phosphatase, catalytic domain                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -----------------1kbpC01 C:26-122 Purple acid phosphatase, domain1                                                1kbpC02 C:123-432  [code=3.60.21.10, no name defined]                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeee.......eeeeeee.......eeeeee......eeee.eee..........eeeeeee.......eeeeee......eeeeee..........eeeeee......hhhhhhhhhhhh......eeee......hhh.hhh.hhhhhhhhhhhhhhh..........hhh....hhh......hhhhhh....hhh........eeee...eeeee...........hhhhhhhhhhhh.......eeeee................hhhhhhhhhhhhh....eeee.....eeee........................eeeee....................eeeee...eeeeeee....eeeeeeee.......eeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbp C   9 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428    


Chain D from PDB  Type:PROTEIN  Length:424
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:424
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455    
           PPAF_PHAVU    36 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 459
               SCOP domains d1kbpd1 D:9-120 Purple acid phosphatase, N-terminal domain                                                      d1kbpd2 D:121-432 Plant purple acid phosphatase, catalytic domain                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -----------------1kbpD01 D:26-122 Purple acid phosphatase, domain1                                                1kbpD02 D:123-432  [code=3.60.21.10, no name defined]                                                                                                                                                                                                                                                                  CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------Metallophos-1kbpD01 D:101-300                                                                                                                                                                           ------------------------Metallophos_C-1kbpD05 D:325-391                                    ----------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------Metallophos-1kbpD02 D:101-300                                                                                                                                                                           ------------------------Metallophos_C-1kbpD06 D:325-391                                    ----------------------------------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------Metallophos-1kbpD03 D:101-300                                                                                                                                                                           ------------------------Metallophos_C-1kbpD07 D:325-391                                    ----------------------------------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------Metallophos-1kbpD04 D:101-300                                                                                                                                                                           ------------------------Metallophos_C-1kbpD08 D:325-391                                    ----------------------------------------- Pfam domains (4)
         Sec.struct. author ......................eeee.......eeeeeee.......eeeeee......eeee.eee..........eeeeeee.......eeeeee......eeeeee..........eeeeee......hhhhhhhhhhhh......eeee......hhh.hhh.hhhhhhhhhhhhhhh..........hhh....hhh......hhhhhh....hhh........eeee...eeeee...........hhhhhhhhhhhh.......eeeee................hhhhhhhhhhhhh....eeee.....eeee........................eeeee....................eeeee...eeeeeee....eeeeeeee.......eeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbp D   9 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: Calcineurin (56)
(-)
Clan: no clan defined [family: Metallophos_C] (5)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PPAF_PHAVU | P80366)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    ATA  [ RasMol ]  +environment [ RasMol ]
    ATB  [ RasMol ]  +environment [ RasMol ]
    ATC  [ RasMol ]  +environment [ RasMol ]
    ATD  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gln A:374 - Pro A:375   [ RasMol ]  
    Gln B:374 - Pro B:375   [ RasMol ]  
    Gln C:374 - Pro C:375   [ RasMol ]  
    Gln D:374 - Pro D:375   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1kbp
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PPAF_PHAVU | P80366
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.1.3.2
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PPAF_PHAVU | P80366
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPAF_PHAVU | P80366: 2qfp 2qfr 3kbp 4dhl 4dsy 4dt2 4kbp 4kkz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1KBP)