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(-) Description

Title :  THE CRYSTAL STRUCTURE OF RED KIDNEY BEAN PURPLE ACID PHOSPHATASE IN COMPLEX WITH DIETHYLENE GLYCOL MONOVANADATE
 
Authors :  D. Feder, L. W. Guddat, G. Schenk
Date :  06 May 13  (Deposition) - 21 May 14  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Beta Barrel, Phosphatase, Hydrolase, Vanadate, Cotyledon Cells (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Feder, L. W. Guddat, G. Schenk
Visualization Of A Transition State In A Metallohydrolase Catalyzed Reaction.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PURPLE ACID PHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.3.2
    Organism Common: FRENCH BEAN,KIDNEY BEAN,STRING BEAN
    Organism Scientific: PHASEOLUS VULGARIS
    Organism Taxid: 3885

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (11, 136)

Asymmetric Unit (11, 136)
No.NameCountTypeFull Name
11RF4Ligand/IonVANADIUM(5+) HYDROXIDE 2-(2-HYDROXYETHOXY)ETHANOLATE(1:4:1)
2ACT10Ligand/IonACETATE ION
3EDO27Ligand/Ion1,2-ETHANEDIOL
4FE4Ligand/IonFE (III) ION
5FUC4Ligand/IonALPHA-L-FUCOSE
6GOL13Ligand/IonGLYCEROL
7NA10Ligand/IonSODIUM ION
8NAG21Ligand/IonN-ACETYL-D-GLUCOSAMINE
9PGE2Ligand/IonTRIETHYLENE GLYCOL
10SO437Ligand/IonSULFATE ION
11ZN4Ligand/IonZINC ION
Biological Unit 1 (8, 61)
No.NameCountTypeFull Name
11RF2Ligand/IonVANADIUM(5+) HYDROXIDE 2-(2-HYDROXYETHOXY)ETHANOLATE(1:4:1)
2ACT5Ligand/IonACETATE ION
3EDO17Ligand/Ion1,2-ETHANEDIOL
4FE-1Ligand/IonFE (III) ION
5FUC2Ligand/IonALPHA-L-FUCOSE
6GOL6Ligand/IonGLYCEROL
7NA-1Ligand/IonSODIUM ION
8NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
9PGE1Ligand/IonTRIETHYLENE GLYCOL
10SO417Ligand/IonSULFATE ION
11ZN-1Ligand/IonZINC ION
Biological Unit 2 (8, 57)
No.NameCountTypeFull Name
11RF2Ligand/IonVANADIUM(5+) HYDROXIDE 2-(2-HYDROXYETHOXY)ETHANOLATE(1:4:1)
2ACT5Ligand/IonACETATE ION
3EDO10Ligand/Ion1,2-ETHANEDIOL
4FE-1Ligand/IonFE (III) ION
5FUC2Ligand/IonALPHA-L-FUCOSE
6GOL7Ligand/IonGLYCEROL
7NA-1Ligand/IonSODIUM ION
8NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
9PGE1Ligand/IonTRIETHYLENE GLYCOL
10SO420Ligand/IonSULFATE ION
11ZN-1Ligand/IonZINC ION

(-) Sites  (127, 127)

Asymmetric Unit (127, 127)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREASP A:164 , ASN A:201 , HIS A:286 , HIS A:323 , FE A:502 , 1RF A:531BINDING SITE FOR RESIDUE ZN A 501
002AC2SOFTWAREASP A:135 , ASP A:164 , TYR A:167 , HIS A:325 , ZN A:501 , 1RF A:531BINDING SITE FOR RESIDUE FE A 502
003AC3SOFTWARESER A:61 , ASN A:64 , ARG A:68 , TYR A:101 , HOH A:840 , HOH A:924BINDING SITE FOR RESIDUE SO4 A 506
004AC4SOFTWAREASN A:294 , HIS A:295 , ASN A:371 , HOH A:661 , HOH A:925BINDING SITE FOR RESIDUE SO4 A 507
005AC5SOFTWAREGLN A:374 , GLN A:376 , ARG A:383 , HOH A:889 , HOH A:992BINDING SITE FOR RESIDUE SO4 A 508
006AC6SOFTWAREARG A:40 , LYS A:96 , TYR A:97BINDING SITE FOR RESIDUE SO4 A 509
007AC7SOFTWAREARG A:40 , TYR A:97 , GLN A:121 , HOH A:897BINDING SITE FOR RESIDUE SO4 A 510
008AC8SOFTWARETYR A:192 , HOH A:976 , GOL B:521BINDING SITE FOR RESIDUE EDO A 511
009AC9SOFTWARETHR A:144 , SER A:147 , NAG A:503 , HOH A:802 , HOH A:857BINDING SITE FOR RESIDUE EDO A 512
010BC1SOFTWARESER A:54 , HOH A:971 , HOH A:1087BINDING SITE FOR RESIDUE EDO A 513
011BC2SOFTWAREARG A:258 , TYR A:263 , LYS A:306 , NA A:532 , HOH A:768 , GLU D:299 , HOH D:658 , HOH D:677BINDING SITE FOR RESIDUE SO4 A 514
012BC3SOFTWARETHR A:305 , ASN A:335 , ILE A:336 , ALA A:337 , TYR A:338 , HOH A:665 , HOH A:691 , HOH A:947 , MET D:298 , GLU D:301 , HOH D:938BINDING SITE FOR RESIDUE GOL A 516
013BC4SOFTWAREARG A:406 , GLN A:408 , HOH A:1082BINDING SITE FOR RESIDUE GOL A 520
014BC5SOFTWAREARG A:304 , TYR A:338 , CYS A:345 , HOH A:1076 , ARG D:304 , TYR D:338BINDING SITE FOR RESIDUE ACT A 521
015BC6SOFTWAREGLY A:410 , HOH A:706 , HOH A:752 , HOH A:922 , FUC B:518BINDING SITE FOR RESIDUE EDO A 522
016BC7SOFTWAREPRO A:153 , LYS A:154 , HOH A:695 , HOH A:929 , TRP B:425 , PRO B:427BINDING SITE FOR RESIDUE EDO A 523
017BC8SOFTWARELYS A:395 , TRP A:419 , NAG A:517 , NAG A:518 , ACT A:525BINDING SITE FOR RESIDUE EDO A 524
018BC9SOFTWARELYS A:154 , LYS A:395 , HIS A:401 , EDO A:524 , HOH A:1063BINDING SITE FOR RESIDUE ACT A 525
019CC1SOFTWAREARG A:329 , SER A:431BINDING SITE FOR RESIDUE EDO A 526
020CC2SOFTWARELYS A:63 , ASN A:64 , LYS B:339 , HOH B:886 , ASN C:294 , ILE C:373BINDING SITE FOR RESIDUE GOL A 527
021CC3SOFTWAREARG A:112 , HOH A:772 , HOH A:958 , HOH A:1064BINDING SITE FOR RESIDUE ACT A 528
022CC4SOFTWARESER A:152 , HIS A:389 , MET A:391 , SER A:403 , ASN A:405 , GLU A:414BINDING SITE FOR RESIDUE EDO A 529
023CC5SOFTWAREGLY A:257 , ARG A:258 , LYS A:306 , GLU D:299 , HOH D:666 , HOH D:914BINDING SITE FOR RESIDUE NA A 530
024CC6SOFTWAREASP A:135 , ASP A:164 , TYR A:167 , ASN A:201 , HIS A:202 , HIS A:295 , HIS A:296 , HIS A:323 , HIS A:325 , TYR A:365 , ZN A:501 , FE A:502 , SO4 D:530BINDING SITE FOR RESIDUE 1RF A 531
025CC7SOFTWARELYS A:306 , SO4 A:514BINDING SITE FOR RESIDUE NA A 532
026CC8SOFTWAREASP B:135 , ASP B:164 , ASN B:201 , HIS B:286 , HIS B:323 , FE B:502 , 1RF B:529BINDING SITE FOR RESIDUE ZN B 501
027CC9SOFTWAREASP B:135 , ASP B:164 , TYR B:167 , HIS B:325 , ZN B:501 , 1RF B:529BINDING SITE FOR RESIDUE FE B 502
028DC1SOFTWARETYR B:263 , LYS B:306 , HOH B:752 , HOH B:989 , HOH B:1006 , GLU C:299 , HOH C:693BINDING SITE FOR RESIDUE SO4 B 506
029DC2SOFTWAREASN B:294 , HIS B:295 , ASN B:371 , HOH B:658 , HOH B:874BINDING SITE FOR RESIDUE SO4 B 507
030DC3SOFTWAREVAL B:348 , LYS B:349 , HOH B:813 , HOH B:849 , HOH B:1040BINDING SITE FOR RESIDUE SO4 B 508
031DC4SOFTWAREGLN B:374 , GLN B:376 , ARG B:383 , HOH B:828 , HOH B:884BINDING SITE FOR RESIDUE SO4 B 509
032DC5SOFTWAREARG B:40 , LYS B:96 , TYR B:97BINDING SITE FOR RESIDUE SO4 B 510
033DC6SOFTWAREARG B:40 , TYR B:97 , GLN B:121 , HOH B:928BINDING SITE FOR RESIDUE SO4 B 511
034DC7SOFTWARETRP B:419 , NAG B:516 , NAG B:517BINDING SITE FOR RESIDUE SO4 B 512
035DC8SOFTWAREARG B:397 , HOH B:864BINDING SITE FOR RESIDUE EDO B 513
036DC9SOFTWARELYS A:155 , LYS B:315 , GLN B:351 , SER B:352 , ARG B:423 , PRO B:427 , HOH B:845BINDING SITE FOR RESIDUE EDO B 514
037EC1SOFTWAREASN B:335 , ILE B:336 , ALA B:337 , TYR B:338 , LYS B:339 , HOH B:671 , HOH B:794 , MET C:298BINDING SITE FOR RESIDUE EDO B 515
038EC2SOFTWAREARG B:112 , HOH B:978 , HOH B:1043BINDING SITE FOR RESIDUE ACT B 519
039EC3SOFTWAREARG B:329 , SER B:330 , VAL B:355 , ALA B:381 , VAL B:418 , ASP B:430BINDING SITE FOR RESIDUE EDO B 520
040EC4SOFTWARELYS A:100 , EDO A:511 , LYS B:349 , ASP B:350 , GLN B:351 , HOH B:1026BINDING SITE FOR RESIDUE GOL B 521
041EC5SOFTWAREARG B:304 , TYR B:338 , CYS B:345 , HOH B:914 , TYR C:338 , NA C:526BINDING SITE FOR RESIDUE ACT B 522
042EC6SOFTWARELYS B:67 , ARG B:113BINDING SITE FOR RESIDUE ACT B 523
043EC7SOFTWAREARG B:258 , LYS B:306 , GLU C:299 , HOH C:909 , HOH C:910BINDING SITE FOR RESIDUE NA B 524
044EC8SOFTWARELYS B:274 , ARG B:275 , SER B:276BINDING SITE FOR RESIDUE GOL B 525
045EC9SOFTWAREGLY B:410 , VAL B:411BINDING SITE FOR RESIDUE SO4 B 526
046FC1SOFTWAREHIS B:295 , 1RF B:529 , HOH B:1029BINDING SITE FOR RESIDUE EDO B 527
047FC2SOFTWARELYS B:71 , LYS B:73 , THR B:91 , HOH B:714BINDING SITE FOR RESIDUE EDO B 528
048FC3SOFTWAREASP B:135 , ASP B:164 , TYR B:167 , ASN B:201 , HIS B:202 , HIS B:295 , HIS B:296 , GLU B:299 , HIS B:323 , HIS B:325 , ZN B:501 , FE B:502 , EDO B:527 , HOH B:1027 , HOH B:1035 , ARG C:258 , HOH C:1023BINDING SITE FOR RESIDUE 1RF B 529
049FC4SOFTWAREASN B:64 , ARG B:66 , ARG B:68 , NA B:531BINDING SITE FOR RESIDUE SO4 B 530
050FC5SOFTWARETYR B:101 , SO4 B:530BINDING SITE FOR RESIDUE NA B 531
051FC6SOFTWAREASP C:135 , ASP C:164 , ASN C:201 , HIS C:286 , HIS C:323 , FE C:502 , 1RF C:534BINDING SITE FOR RESIDUE ZN C 501
052FC7SOFTWAREASP C:135 , ASP C:164 , TYR C:167 , HIS C:325 , ZN C:501 , 1RF C:534BINDING SITE FOR RESIDUE FE C 502
053FC8SOFTWAREARG C:9BINDING SITE FOR RESIDUE SO4 C 506
054FC9SOFTWAREGLN C:374 , GLN C:376 , ARG C:383BINDING SITE FOR RESIDUE SO4 C 507
055GC1SOFTWAREGLY C:410 , VAL C:411 , HOH C:760BINDING SITE FOR RESIDUE SO4 C 508
056GC2SOFTWARELYS C:96 , TYR C:97 , HOH C:858BINDING SITE FOR RESIDUE SO4 C 509
057GC3SOFTWAREARG C:40 , TYR C:97 , GLN C:121 , HOH C:820 , HOH C:899BINDING SITE FOR RESIDUE SO4 C 510
058GC4SOFTWAREVAL C:348 , LYS C:349 , HOH C:818 , HOH C:954 , HOH C:973BINDING SITE FOR RESIDUE SO4 C 511
059GC5SOFTWAREARG C:170 , TYR C:171BINDING SITE FOR RESIDUE SO4 C 512
060GC6SOFTWARELYS C:274 , ARG C:275 , SER C:276BINDING SITE FOR RESIDUE SO4 C 513
061GC7SOFTWAREARG C:112 , HOH C:815 , HOH C:890 , HOH C:891BINDING SITE FOR RESIDUE SO4 C 514
062GC8SOFTWAREARG C:271 , LYS C:313 , TYR C:314BINDING SITE FOR RESIDUE SO4 C 515
063GC9SOFTWAREARG C:9BINDING SITE FOR RESIDUE EDO C 516
064HC1SOFTWAREMET B:298 , HOH B:635 , HOH B:910 , THR C:305 , ASN C:335 , ILE C:336 , ALA C:337 , TYR C:338 , HOH C:741BINDING SITE FOR RESIDUE GOL C 517
065HC2SOFTWARELYS C:395 , TRP C:419 , NAG C:518 , NAG C:519BINDING SITE FOR RESIDUE EDO C 521
066HC3SOFTWARELYS C:67 , ARG C:113 , HOH C:975BINDING SITE FOR RESIDUE GOL C 522
067HC4SOFTWAREARG C:58 , LEU C:107 , THR C:111BINDING SITE FOR RESIDUE ACT C 523
068HC5SOFTWAREARG C:406 , GLN C:408 , HOH C:911BINDING SITE FOR RESIDUE GOL C 524
069HC6SOFTWARELYS C:71 , GLY C:72 , LYS C:73 , THR C:90 , THR C:91 , ARG C:93 , HOH C:897BINDING SITE FOR RESIDUE GOL C 525
070HC7SOFTWAREACT B:522 , HOH B:910 , HOH C:729 , HOH C:741BINDING SITE FOR RESIDUE NA C 526
071HC8SOFTWAREASN C:294 , ASP C:369 , SER C:370 , ASN C:371 , HOH C:626 , HOH C:1025BINDING SITE FOR RESIDUE PGE C 527
072HC9SOFTWARETHR A:76 , TYR A:77 , ARG A:78 , THR C:76 , TYR C:77 , ARG C:78BINDING SITE FOR RESIDUE GOL C 528
073IC1SOFTWAREGLU B:299 , HOH B:615 , HOH B:668 , ARG C:258 , LYS C:306BINDING SITE FOR RESIDUE NA C 529
074IC2SOFTWAREGLU B:299 , TYR C:263 , LYS C:306 , HOH C:671 , HOH C:709BINDING SITE FOR RESIDUE EDO C 530
075IC3SOFTWAREARG B:258 , HOH B:1030 , HIS C:295 , HIS C:296 , 1RF C:534 , HOH C:1018BINDING SITE FOR RESIDUE EDO C 531
076IC4SOFTWARELEU C:13 , TYR C:171 , ARG C:178 , HOH C:721 , HOH C:753BINDING SITE FOR RESIDUE SO4 C 532
077IC5SOFTWAREASN C:173 , HIS C:174 , GLU C:209 , HOH C:794 , HOH C:1021BINDING SITE FOR RESIDUE ACT C 533
078IC6SOFTWAREASP C:135 , ASP C:164 , TYR C:167 , ASN C:201 , HIS C:202 , HIS C:295 , HIS C:296 , HIS C:323 , HIS C:325 , TYR C:365 , ZN C:501 , FE C:502 , EDO C:531 , HOH C:1018BINDING SITE FOR RESIDUE 1RF C 534
079IC7SOFTWAREASP D:135 , ASP D:164 , ASN D:201 , HIS D:286 , HIS D:323 , FE D:502 , 1RF D:538BINDING SITE FOR RESIDUE ZN D 501
080IC8SOFTWAREASP D:135 , ASP D:164 , TYR D:167 , HIS D:325 , ZN D:501 , 1RF D:538BINDING SITE FOR RESIDUE FE D 502
081IC9SOFTWARELYS D:7 , ARG D:9BINDING SITE FOR RESIDUE SO4 D 506
082JC1SOFTWAREASN D:294 , HIS D:295 , ASN D:371 , HOH D:635 , HOH D:897BINDING SITE FOR RESIDUE SO4 D 507
083JC2SOFTWAREGLY D:410 , VAL D:411 , HOH D:743 , HOH D:1039BINDING SITE FOR RESIDUE SO4 D 508
084JC3SOFTWARELYS A:274 , ARG A:275 , SER A:276 , HIS A:424 , HOH A:832 , HOH A:861 , GLN D:374 , HOH D:932BINDING SITE FOR RESIDUE SO4 D 509
085JC4SOFTWAREGLU A:299 , HOH A:744 , HOH A:1043 , TYR D:263 , LYS D:306 , NA D:537 , HOH D:927BINDING SITE FOR RESIDUE SO4 D 510
086JC5SOFTWAREHOH B:1032 , LYS D:274 , ARG D:275 , SER D:276 , NA D:539BINDING SITE FOR RESIDUE SO4 D 511
087JC6SOFTWARELYS D:96 , TYR D:97 , HOH D:845BINDING SITE FOR RESIDUE SO4 D 512
088JC7SOFTWAREARG D:40 , TYR D:97 , GLN D:121 , HOH D:873BINDING SITE FOR RESIDUE SO4 D 513
089JC8SOFTWAREVAL D:348 , LYS D:349 , HOH D:794BINDING SITE FOR RESIDUE SO4 D 514
090JC9SOFTWAREARG D:58 , LEU D:107 , THR D:111BINDING SITE FOR RESIDUE ACT D 515
091KC1SOFTWARELYS D:67 , ARG D:113BINDING SITE FOR RESIDUE EDO D 516
092KC2SOFTWAREASP D:409 , GLY D:410 , VAL D:413 , HOH D:1040BINDING SITE FOR RESIDUE EDO D 517
093KC3SOFTWARETHR D:144 , SER D:147 , HIS D:148 , LEU D:151 , HOH D:730BINDING SITE FOR RESIDUE PGE D 518
094KC4SOFTWAREMET A:298 , HOH A:707 , HOH A:1017 , HOH A:1076 , THR D:305 , ASN D:335 , ILE D:336 , ALA D:337 , TYR D:338 , HOH D:748BINDING SITE FOR RESIDUE GOL D 519
095KC5SOFTWARELYS D:313BINDING SITE FOR RESIDUE EDO D 520
096KC6SOFTWAREARG D:112 , ARG D:113 , HOH D:862 , HOH D:1016BINDING SITE FOR RESIDUE GOL D 521
097KC7SOFTWAREARG D:9BINDING SITE FOR RESIDUE EDO D 522
098KC8SOFTWAREHOH C:963 , LYS D:315BINDING SITE FOR RESIDUE EDO D 523
099KC9SOFTWAREASN D:8 , ASP D:10 , ARG D:170BINDING SITE FOR RESIDUE EDO D 524
100LC1SOFTWARETRP D:419 , ACT D:526 , NAG D:534 , NAG D:535BINDING SITE FOR RESIDUE EDO D 525
101LC2SOFTWARELYS D:154 , LYS D:395 , HIS D:401 , EDO D:525BINDING SITE FOR RESIDUE ACT D 526
102LC3SOFTWARETHR B:76 , TYR B:77 , ARG B:78 , THR D:76 , TYR D:77 , ARG D:78BINDING SITE FOR RESIDUE GOL D 527
103LC4SOFTWAREGLU A:299 , HOH A:1072 , HOH A:1073 , GLY D:257 , ARG D:258 , LYS D:306BINDING SITE FOR RESIDUE NA D 528
104LC5SOFTWAREARG A:258 , HIS D:295 , HIS D:296 , HOH D:1022BINDING SITE FOR RESIDUE EDO D 529
105LC6SOFTWAREHIS A:296 , 1RF A:531 , ARG D:258 , HOH D:857 , HOH D:1031 , HOH D:1044BINDING SITE FOR RESIDUE SO4 D 530
106LC7SOFTWAREASN D:173 , GLU D:209BINDING SITE FOR RESIDUE EDO D 531
107LC8SOFTWAREMET D:372 , GLN D:374 , ARG D:383 , HOH D:835 , HOH D:1019BINDING SITE FOR RESIDUE SO4 D 532
108LC9SOFTWAREHIS D:202 , TYR D:365 , 1RF D:538 , HOH D:1024 , HOH D:1025BINDING SITE FOR RESIDUE NA D 533
109MC1SOFTWAREHOH A:707 , THR D:305 , SO4 D:510 , HOH D:842 , HOH D:927BINDING SITE FOR RESIDUE NA D 537
110MC2SOFTWAREASP D:135 , ASP D:164 , TYR D:167 , ASN D:201 , HIS D:202 , HIS D:296 , HIS D:323 , HIS D:325 , ZN D:501 , FE D:502 , NA D:533BINDING SITE FOR RESIDUE 1RF D 538
111MC3SOFTWAREVAL D:273 , ARG D:275 , SO4 D:511 , HOH D:721BINDING SITE FOR RESIDUE NA D 539
112MC4SOFTWAREASN A:81 , PRO A:172 , ASN A:173 , HOH A:952 , TYR C:24 , ASP C:50BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 81 RESIDUES 504 TO 505
113MC5SOFTWARETYR A:24 , ARG A:108 , ASN A:109BINDING SITE FOR MONO-SACCHARIDE NAG A 515 BOUND TO ASN A 109
114MC6SOFTWAREASP A:16 , VAL A:17 , PHE A:140 , ASN A:143 , SER A:147 , EDO A:512 , HOH A:802BINDING SITE FOR MONO-SACCHARIDE NAG A 503 BOUND TO ASN A 143
115MC7SOFTWAREASN A:396 , HIS A:399 , TRP A:419 , EDO A:524 , HOH A:800 , HOH A:879 , HOH A:884 , HOH A:899 , HOH A:973 , HOH A:1068BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 396 RESIDUES 517 TO 519
116MC8SOFTWAREASN B:81 , TYR D:24 , ASP D:50BINDING SITE FOR MONO-SACCHARIDE NAG B 504 BOUND TO ASN B 81
117MC9SOFTWARETYR B:24 , ARG B:108 , ASN B:109BINDING SITE FOR MONO-SACCHARIDE NAG B 503 BOUND TO ASN B 109
118NC1SOFTWAREMET B:11 , ASP B:16 , PHE B:140 , ASN B:143 , SER B:147BINDING SITE FOR MONO-SACCHARIDE NAG B 505 BOUND TO ASN B 143
119NC2SOFTWAREEDO A:522 , HOH A:823 , HOH A:928 , HOH A:980 , LYS B:395 , ASN B:396 , HIS B:399 , TRP B:419 , SO4 B:512 , HOH B:621 , HOH B:795 , HOH B:880 , HOH B:908 , HOH B:920BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 396 RESIDUES 516 TO 518
120NC3SOFTWARETYR A:24 , ASP A:50 , ASN C:81BINDING SITE FOR MONO-SACCHARIDE NAG C 505 BOUND TO ASN C 81
121NC4SOFTWARETYR C:24 , ARG C:108 , ASN C:109BINDING SITE FOR MONO-SACCHARIDE NAG C 504 BOUND TO ASN C 109
122NC5SOFTWAREASP C:16 , PHE C:140 , ASN C:143 , SER C:147 , HOH C:853BINDING SITE FOR MONO-SACCHARIDE NAG C 503 BOUND TO ASN C 143
123NC6SOFTWAREPRO A:375 , LYS C:395 , ASN C:396 , THR C:398 , HIS C:399 , TRP C:419 , TYR C:426 , EDO C:521 , HOH C:840 , HOH C:875 , HOH C:884BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 396 RESIDUES 518 TO 520
124NC7SOFTWARETYR B:24 , ASP B:50 , ASN D:81 , ASN D:173BINDING SITE FOR MONO-SACCHARIDE NAG D 505 BOUND TO ASN D 81
125NC8SOFTWARETYR D:24 , ARG D:108 , ASN D:109 , HOH D:949BINDING SITE FOR MONO-SACCHARIDE NAG D 504 BOUND TO ASN D 109
126NC9SOFTWAREASP D:16 , VAL D:17 , ASN D:143 , SER D:147 , HOH D:828 , HOH D:944BINDING SITE FOR MONO-SACCHARIDE NAG D 503 BOUND TO ASN D 143
127OC1SOFTWAREGLN B:374 , HOH B:826 , LYS D:395 , ASN D:396 , ARG D:397 , THR D:398 , HIS D:399 , TRP D:419 , EDO D:525 , HOH D:942BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 396 RESIDUES 534 TO 536

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:345 -D:345
2B:345 -C:345

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gln A:374 -Pro A:375
2Gln B:374 -Pro B:375
3Gln C:374 -Pro C:375
4Gln D:374 -Pro D:375

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KKZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KKZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4KKZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........eeeeeee.......eeeeeee........eeeee......eee..eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhhh.hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kkz A   8 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDS 431
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427    


Chain B from PDB  Type:PROTEIN  Length:425
                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........eeeeeee.......eeeeeee........eeeee......eee..eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhh..hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kkz B   8 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427     


Chain C from PDB  Type:PROTEIN  Length:423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........eeeeeee.......eeeeeee........eeeee......eee..eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhh..hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kkz C   8 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 430
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427   


Chain D from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhh........eeeeeee.......eeeeeee.......eeeeee......eeee.eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhh..hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kkz D   7 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KKZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KKZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KKZ)

(-) Gene Ontology  (7, 7)

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  4kkz
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  PPAF_PHAVU | P80366
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        PPAF_PHAVU | P80366: 1kbp 2qfp 2qfr 3kbp 4dhl 4dsy 4dt2 4kbp

(-) Related Entries Specified in the PDB File

4kof 4koz