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(-) Description

Title :  G6 MUTANT OF PAS, ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA, IN COMPLEX WITH PHENYLPHOSPHONIC ACID
 
Authors :  C. M. Miton, S. Jonas, M. F. Mohammed, G. Fischer, B. V. Loo, B. Kintses, M N. Tokuriki, F. Hollfelder
Date :  14 Apr 14  (Deposition) - 29 Apr 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Catalytic Promiscuity, Directed Evolution, Neutral Drift, Sulfatase, Superfamily (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Miton, S. Jonas, M. F. Mohammed, G. Fischer
Arylsulfatase From Pseudomonas Aeruginosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ARYLSULFATASE
    Chains: A, B
    EC Number: 3.1.6.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSF-DUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: AS, ARYL-SULFATE SULPHOHYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric Unit (5, 13)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2DDZ2Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
3NH42Ligand/IonAMMONIUM ION
4PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
5SV74Ligand/IonPHENYLPHOSPHONIC ACID
Biological Unit 1 (4, 6)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DDZ1Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
3NH41Ligand/IonAMMONIUM ION
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
5SV72Ligand/IonPHENYLPHOSPHONIC ACID
Biological Unit 2 (4, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DDZ1Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
3NH41Ligand/IonAMMONIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5SV72Ligand/IonPHENYLPHOSPHONIC ACID

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:13 , ASP A:14 , DDZ A:51 , ASP A:317 , ASN A:318BINDING SITE FOR RESIDUE CA A1538
02AC2SOFTWAREASP B:13 , ASP B:14 , DDZ B:51 , ASP B:317 , ASN B:318BINDING SITE FOR RESIDUE CA B1538
03AC3SOFTWAREDDZ B:51 , LYS B:113 , HIS B:115 , GLY B:138 , THR B:160 , HIS B:211 , LYS B:375 , HOH B:2048 , HOH B:2419BINDING SITE FOR RESIDUE SV7 B1539
04AC4SOFTWAREDDZ A:51 , GLU A:74 , LYS A:113 , HIS A:115 , GLY A:138 , THR A:160 , HIS A:211 , LYS A:375 , HOH A:2054 , HOH A:2450BINDING SITE FOR RESIDUE SV7 A1539
05AC5SOFTWAREASP A:229 , TRP A:265 , ARG A:273 , ARG B:236 , GLN B:237 , LEU B:240 , NH4 B:1542 , HOH B:2224 , HOH B:2420BINDING SITE FOR RESIDUE SV7 B1540
06AC6SOFTWAREPHE A:377 , VAL A:482 , PHE A:533 , VAL A:535BINDING SITE FOR RESIDUE PEG A1541
07AC7SOFTWAREGLY A:21 , ASP A:33 , ARG A:242BINDING SITE FOR RESIDUE PEG A1542
08AC8SOFTWAREGLY B:21 , ASP B:33 , ARG B:242BINDING SITE FOR RESIDUE PEG B1541
09AC9SOFTWAREGLU B:254 , ALA B:255 , SV7 B:1540 , HOH B:2224BINDING SITE FOR RESIDUE NH4 B1542
10BC1SOFTWAREARG A:236 , GLN A:237 , LEU A:240 , ALA A:255 , HOH A:2246 , HOH A:2247 , HOH A:2452 , ASP B:229 , TRP B:265 , ARG B:273BINDING SITE FOR RESIDUES SV7 A1540 AND NH4 A1543

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CYS)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Ala A:209 -Pro A:210
2Trp A:212 -Pro A:213
3Gly A:332 -Pro A:333
4Ala A:369 -Pro A:370
5Ala A:480 -Pro A:481
6Ala B:209 -Pro B:210
7Trp B:212 -Pro B:213
8Pro B:329 -Lys B:330
9Ala B:369 -Pro B:370
10Ala B:480 -Pro B:481

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CYS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CYS)

(-) Exons   (0, 0)

(no "Exon" information available for 4CYS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:534
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee.......hhhhh....hhhhhhhhhhheee..ee.....hhhhhhhh...hhhhhh...hhhhh...................hhhhhhhh...eeeeeee.....hhhhh.......eeeee..................hhhhhh....eee..ee........hhhhhhhhhhhhhhhh......eeeeee..........hhhhhhhhh....hhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......hhhhhhhhh.hhhhhhhhhh...............hhhhhhhhhhh.........hhhhhh..eeee.........ee...ee..hhhhhhhhhhh......ee..ee........hhhhhh...........eeeeee..eeeeee..eeeee.........eeeee..............hhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cys A   3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASAaSPTRSMLLTGTDHHIAGIGTVAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLDFLDRHYDNSLENIGSANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWGLFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSDTGVVEGASPFLVR 536
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532    
                                                                           51-DDZ                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:534
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee.......hhhhh....hhhhhhhhhhheee..ee.....hhhhhhhh...hhhhhh...hhhhh...................hhhhhhhhh..eeeeeee.....hhhhh.......eeeee..................hhhhhh....eee..ee........hhhhhhhhhhhhhhhh......eeeeee..........hhhhhhhhh....hhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......hhhhh.....hhhhhhhhhh...............hhhhhhhhhhh.........hhhhhh..eeee.........ee...ee..hhhhhhhhhhh......ee..ee........hhhhhh...........eeeeee..eeeeee..eeeee.........eeeee..............hhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cys B   3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASAaSPTRSMLLTGTDHHIAGIGTVAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLDFLDRHYDNSLENIGSANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWGLFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSDTGVVEGASPFLVR 536
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532    
                                                                           51-DDZ
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CYS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CYS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CYS)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:209 - Pro A:210   [ RasMol ]  
    Ala A:369 - Pro A:370   [ RasMol ]  
    Ala A:480 - Pro A:481   [ RasMol ]  
    Ala B:209 - Pro B:210   [ RasMol ]  
    Ala B:369 - Pro B:370   [ RasMol ]  
    Ala B:480 - Pro B:481   [ RasMol ]  
    Gly A:332 - Pro A:333   [ RasMol ]  
    Pro B:329 - Lys B:330   [ RasMol ]  
    Trp A:212 - Pro A:213   [ RasMol ]  
    Trp B:212 - Pro B:213   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARS_PSEAE | P51691: 1hdh 4cxk 4cxs 4cxu 4cyr 5aj9

(-) Related Entries Specified in the PDB File

4cxk G9 MUTANT OF PAS, ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA
4cxs G4 MUTANT OF PAS, ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA, IN COMPLEX WITH PHENYLPHOSPHONIC ACID
4cxu G4 MUTANT OF PAS, ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA, IN COMPLEX WITH 3-BR-PHENOLPHENYLPHOSPHONATE
4cyr G4 MUTANT OF PAS, ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA