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(-) Description

Title :  ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA
 
Authors :  I. Boltes, H. Czapinska, A. Kahnert, R. V. Buelow, T. Dirks, B. Schmidt, K. V. Figura, M. A. Kertesz, I. Uson
Date :  16 Nov 00  (Deposition) - 15 Nov 01  (Release) - 16 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Sulfatase, Formylglycine Hydrate (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. Boltes, H. Czapinska, A. Kahnert, R. Von Buelow, T. Dirks, B. Schmidt, K. Von Figura, M. A. Kertesz, I. Uson
1. 3 A Structure Of Arylsulfatase From Pseudomonas Aeruginosa Establishes The Catalytic Mechanism Of Sulfate Ester Cleavage In The Sulfatase Family.
Structure V. 9 483 2001
PubMed-ID: 11435113  |  Reference-DOI: 10.1016/S0969-2126(01)00609-8

(-) Compounds

Molecule 1 - ARYLSULFATASE
    ChainsA, B
    EC Number3.1.6.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPSEUDOMONAS AERUGINOSA
    Organism Taxid287
    StrainPAO1S

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2DDZ2Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
3SO48Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DDZ1Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
3SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DDZ1Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:13 , ASP A:14 , DDZ A:51 , ASP A:317 , ASN A:318 , SO4 A:1529BINDING SITE FOR RESIDUE CA A1528
02AC2SOFTWAREASP A:13 , ASP A:14 , THR A:50 , DDZ A:51 , MET A:72 , LYS A:113 , HIS A:115 , GLY A:138 , HIS A:211 , LYS A:375 , CA A:1528BINDING SITE FOR RESIDUE SO4 A1529
03AC3SOFTWARETHR A:262 , ARG A:263BINDING SITE FOR RESIDUE SO4 A1530
04AC4SOFTWAREARG A:438 , HIS A:452 , THR A:456 , HOH A:2365 , HOH A:2410BINDING SITE FOR RESIDUE SO4 A1531
05AC5SOFTWAREARG A:466 , HOH A:2412 , LYS B:518BINDING SITE FOR RESIDUE SO4 A1532
06AC6SOFTWAREASP B:13 , ASP B:14 , DDZ B:51 , ASP B:317 , ASN B:318 , SO4 B:1529BINDING SITE FOR RESIDUE CA B1528
07AC7SOFTWAREASP B:13 , ASP B:14 , THR B:50 , DDZ B:51 , MET B:72 , LYS B:113 , HIS B:115 , GLY B:138 , HIS B:211 , LYS B:375 , CA B:1528BINDING SITE FOR RESIDUE SO4 B1529
08AC8SOFTWARETHR B:262 , ARG B:263 , HOH B:2201 , HOH B:2394 , HOH B:2395BINDING SITE FOR RESIDUE SO4 B1530
09AC9SOFTWAREARG B:438 , HIS B:452 , THR B:456 , HOH B:2396 , HOH B:2397BINDING SITE FOR RESIDUE SO4 B1531
10BC1SOFTWAREARG A:428 , ARG B:428 , HOH B:2328 , HOH B:2398BINDING SITE FOR RESIDUE SO4 B1532

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HDH)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Ala A:209 -Pro A:210
2Trp A:212 -Pro A:213
3Gly A:332 -Pro A:333
4Ala A:369 -Pro A:370
5Ala A:480 -Pro A:481
6Ala B:209 -Pro B:210
7Trp B:212 -Pro B:213
8Gly B:332 -Pro B:333
9Ala B:369 -Pro B:370
10Ala B:480 -Pro B:481

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HDH)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SULFATASE_1PS00523 Sulfatases signature 1.ARS_PSEAE49-61
 
  2A:49-61
B:49-61
2SULFATASE_2PS00149 Sulfatases signature 2.ARS_PSEAE105-115
 
  2A:105-115
B:105-115
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SULFATASE_1PS00523 Sulfatases signature 1.ARS_PSEAE49-61
 
  1A:49-61
-
2SULFATASE_2PS00149 Sulfatases signature 2.ARS_PSEAE105-115
 
  1A:105-115
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SULFATASE_1PS00523 Sulfatases signature 1.ARS_PSEAE49-61
 
  1-
B:49-61
2SULFATASE_2PS00149 Sulfatases signature 2.ARS_PSEAE105-115
 
  1-
B:105-115

(-) Exons   (0, 0)

(no "Exon" information available for 1HDH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:525
 aligned with ARS_PSEAE | P51691 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:525
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522     
            ARS_PSEAE     3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASTCSPTRSMLLTGTDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWELFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSETGVV 527
               SCOP domains d1hdha_ A: Arylsulfatase B (4-sulfatase)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1hdhA01 A:3-450 Alkaline Phosphatase, subunit A                                                                                                                                                                                                                                                                                                                                                                                                                 1hdhA02 A:451-527  [code=3.30.1120.10, no name defined]                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.......hhhhh....hhhhhhhhhhheee..ee.....hhhhhhhh...hhhhhh...hhhhh...................hhhhhhhh...eeeeeee.....hhhhh.......eeeee..................hhhhhh....eee..ee........hhhhhhhhhhhhhhhh......eeeeee..........hhhhhhhhh....hhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......hhhhhhhhh.hhhhhhhhhh..hhhhh........hhhhhhhhhhh.........hhhhhh..eeee.........ee...ee..hhhhhhhhhhh......ee..ee........hhhhhh...........eeeeee..eeeeee..eeeee.........eeeee..............hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------SULFATASE_1  -------------------------------------------SULFATASE_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1hdh A   3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASTaSPTRSMLLTGTDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWELFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSETGVV 527
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522     
                                                                           51-DDZ                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        

Chain B from PDB  Type:PROTEIN  Length:525
 aligned with ARS_PSEAE | P51691 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:525
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522     
            ARS_PSEAE     3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASTCSPTRSMLLTGTDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWELFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSETGVV 527
               SCOP domains d1hdhb_ B: Arylsulfatase B (4-sulfatase)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1hdhB01 B:3-450 Alkaline Phosphatase, subunit A                                                                                                                                                                                                                                                                                                                                                                                                                 1hdhB02 B:451-526  [code=3.30.1120.10, no name defined]                     - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.......hhhhh....hhhhhhhhhhheee..ee.....hhhhhhhh...hhhhhh...hhhhh...................hhhhhhhh...eeeeeee.....hhhhh.......eeeee..................hhhhhh....eee..ee........hhhhhhhhhhhhhhhh......eeeeee..........hhhhhhhhh....hhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......hhhhhhhhh.hhhhhhhhhh..hhhhh........hhhhhhhhhhh.........hhhhhh..eeee.........ee...ee..hhhhhhhhhhh......ee..ee........hhhhhh...........eeeeee..eeeeee..eeeee.........eeeee..............hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------SULFATASE_1  -------------------------------------------SULFATASE_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1hdh B   3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASTaSPTRSMLLTGTDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWELFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSETGVV 527
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522     
                                                                           51-DDZ                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HDH)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (ARS_PSEAE | P51691)
molecular function
    GO:0004065    arylsulfatase activity    Catalysis of the reaction: a phenol sulfate + H2O = a phenol + sulfate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008081    phosphoric diester hydrolase activity    Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
    GO:0008484    sulfuric ester hydrolase activity    Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ARS_PSEAE | P516914cxk 4cxs 4cxu 4cyr 4cys 5aj9

(-) Related Entries Specified in the PDB File

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