Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  G7 MUTANT OF PAS, ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA
 
Authors :  C. M. Miton, G. Fischer, S. Jonas, M. F. Mohammed, B. V. Loo, B. Kintses, M N. Tokuriki, F. Hollfelder
Date :  20 Feb 15  (Deposition) - 16 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Catalytic Promiscuity, Directed Evolution, Neutral Drift, Sulfatase, Superfamily (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Miton, G. Fischer, S. Jonas, M. F. Mohammed, B. V. Loo, B. Kintses, M. Hyvonen, N. Tokuriki, F. Hollfelder
Arylsulfatase From Pseudomonas Aeruginosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ARYLSULFATASE
    Chains: A, B
    EC Number: 3.1.6.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSF-DUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 29)

Asymmetric Unit (5, 29)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL10Ligand/IonCHLORIDE ION
3DDZ2Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
4MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5SO413Ligand/IonSULFATE ION
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3DDZ1Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
4MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5SO47Ligand/IonSULFATE ION
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3DDZ1Mod. Amino Acid3,3-DIHYDROXY L-ALANINE
4MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5SO46Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE B:400BINDING SITE FOR RESIDUE CL B1452
02AC2SOFTWAREASP A:13 , ASP A:14 , DDZ A:51 , ASP A:317 , ASN A:318BINDING SITE FOR RESIDUE CA A1529
03AC3SOFTWAREDDZ A:51 , LYS A:113 , HIS A:115 , HIS A:211 , LYS A:375BINDING SITE FOR RESIDUE SO4 A1530
04AC4SOFTWAREHIS A:452 , THR A:456 , HOH A:2202 , HOH A:2203 , ASN B:455BINDING SITE FOR RESIDUE SO4 A1531
05AC5SOFTWARETHR A:262 , ARG A:263BINDING SITE FOR RESIDUE SO4 A1532
06AC6SOFTWAREGLN A:506 , PRO A:507 , GLY A:508 , LYS A:509BINDING SITE FOR RESIDUE SO4 A1533
07AC7SOFTWAREVAL A:357 , TRP A:358 , HOH A:2155 , HOH A:2164 , HOH A:2172BINDING SITE FOR RESIDUE SO4 A1534
08AC8SOFTWARETYR A:143 , PRO A:217 , ARG A:218 , GLU A:219 , HOH A:2075BINDING SITE FOR RESIDUE SO4 A1535
09AC9SOFTWAREGLN A:197 , GLN A:304BINDING SITE FOR RESIDUE SO4 A1536
10BC1SOFTWAREARG A:236 , GLN A:237 , GLU A:254 , ALA A:255 , ASP B:229 , TRP B:265 , ARG B:273BINDING SITE FOR RESIDUE MES A1537
11BC2SOFTWAREARG A:242BINDING SITE FOR RESIDUE CL A1538
12BC3SOFTWAREARG A:289BINDING SITE FOR RESIDUE CL A1539
13BC4SOFTWAREASP B:13 , ASP B:14 , DDZ B:51 , ASP B:317 , ASN B:318 , SO4 B:1530BINDING SITE FOR RESIDUE CA B1529
14BC5SOFTWAREDDZ B:51 , LYS B:113 , HIS B:115 , HIS B:211 , LYS B:375 , CA B:1529 , HOH B:2200BINDING SITE FOR RESIDUE SO4 B1530
15BC6SOFTWAREASN A:455 , HIS B:452 , THR B:456 , HOH B:2187BINDING SITE FOR RESIDUE SO4 B1531
16BC7SOFTWAREGLN B:506 , PRO B:507 , GLY B:508 , LYS B:509BINDING SITE FOR RESIDUE SO4 B1532
17BC8SOFTWAREASN B:345 , VAL B:357 , TRP B:358 , HOH B:2161BINDING SITE FOR RESIDUE SO4 B1533
18BC9SOFTWARETYR B:143 , PRO B:217 , ARG B:218 , GLU B:219 , HOH B:2071BINDING SITE FOR RESIDUE SO4 B1534
19CC1SOFTWARETHR B:262 , ARG B:263BINDING SITE FOR RESIDUE SO4 B1535
20CC2SOFTWAREASP A:229 , TRP A:265 , ARG A:273 , HOH A:2106 , GLN B:237 , VAL B:253 , GLU B:254 , ALA B:255BINDING SITE FOR RESIDUE MES B1536
21CC3SOFTWAREHIS B:89 , LYS B:119 , GLN B:122BINDING SITE FOR RESIDUE CL B1537
22CC4SOFTWAREPHE B:404BINDING SITE FOR RESIDUE CL B1538
23CC5SOFTWAREPRO B:333 , ASP B:334BINDING SITE FOR RESIDUE CL B1539

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AJ9)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ala A:209 -Pro A:210
2Trp A:212 -Pro A:213
3Ala A:369 -Pro A:370
4Ala A:480 -Pro A:481
5Ala B:209 -Pro B:210
6Trp B:212 -Pro B:213
7Gly B:332 -Pro B:333
8Ala B:369 -Pro B:370
9Ala B:480 -Pro B:481

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AJ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AJ9)

(-) Exons   (0, 0)

(no "Exon" information available for 5AJ9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:526
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee........hhhh....hhhhhhhhhhheee..ee.....hhhhhhhh...hhhhhh...hhhhh...................hhhhhhhhh..eeeeeee.....hhhhh.......eeeee..................hhhhhh....eee..ee........hhhhhhhhhhhhhhhh......eeeeee..........hhhhhhhhh....hhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......hhhhh.....hhhhhhhhhh..hhhhh........hhhhhhhhhhh.........hhhhhh..eeee.........ee...ee..hhhhhhhhhhh....................hhhhhh...........eeeeee..eeeeee..eeeee.........eeeee..............hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aj9 A   3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASAaSPTRSMLLTGTDHHIAGLGTVAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLDFLDRHYDNSLENIGSANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWGLFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSDTGVVE 528
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522      
                                                                           51-DDZ                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:526
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee........hhhh....hhhhhhhhhhheee..ee.....hhhhhhhh...hhhhhh...hhhhh...................hhhhhhhhh..eeeeeee.....hhhhh.......eeeee..................hhhhhh....eee..ee........hhhhhhhhhhhhhhhh......eeeeee..........hhhhhhhhh....hhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......hhhhhhhhh.hhhhhhhhhh..hhhhh........hhhhhhhhhhh.........hhhhhh..eeee.........ee...ee..hhhhhhhhhhh....................hhhhhh...........eeeeee..eeeeee..eeeee.........eeeee..............hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aj9 B   3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASAaSPTRSMLLTGTDHHIAGLGTVAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLDFLDRHYDNSLENIGSANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWGLFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSDTGVVE 528
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522      
                                                                           51-DDZ
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AJ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AJ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AJ9)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DDZ  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MES  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:209 - Pro A:210   [ RasMol ]  
    Ala A:369 - Pro A:370   [ RasMol ]  
    Ala A:480 - Pro A:481   [ RasMol ]  
    Ala B:209 - Pro B:210   [ RasMol ]  
    Ala B:369 - Pro B:370   [ RasMol ]  
    Ala B:480 - Pro B:481   [ RasMol ]  
    Gly B:332 - Pro B:333   [ RasMol ]  
    Trp A:212 - Pro A:213   [ RasMol ]  
    Trp B:212 - Pro B:213   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5aj9
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ARS_PSEAE | P51691
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.1.6.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  ARS_PSEAE | P51691
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARS_PSEAE | P51691: 1hdh 4cxk 4cxs 4cxu 4cyr 4cys

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5AJ9)