4CC4 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   COMPLEX OF INLC OF LISTERIA MONOCYTOGENES AND HUMAN TUBA C-TERMINAL SH3 DOMAIN

Authors :   L. Polle, L. Rigano, R. Julian, K. Ireton, W. -D. Schubert

Date :   17 Oct 13 (Deposition) - 30 Oct 13 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Cell Invasion, Bacterial Infection, Pathogenesis, Listerial Cell-Cell Spread, Virulence Factor, Protein-Protein Interactions, Leucine-Rich Repeat, Src Homology 3 Domain, Disruption Of Cortical Tension, Cell Membrane Protrusions (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Polle, L. A. Rigano, R. Julian, K. Ireton, W. Schubert
Structural Details Of Human Tuba Recruitment By Inlc Of Listeria Monocytogenes Elucidate Bacterial Cell-Cell Spreading.
Structure V. 22 304 2014
PubMed-ID: 24332715 | Reference-DOI: 10.1016/J.STR.2013.10.017

Molecule 1 - INLC PROTEIN
	Chains	:	A, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET21A
	Expression System Vector Type	:	PLASMID
	Fragment	:	INTERNALIN DOMAIN, RESIDUES 35-297
	Mutation	:	YES
	Organism Scientific	:	LISTERIA MONOCYTOGENES EGD-E
	Organism Taxid	:	169963
	Synonym	:	INLC, INTERNALIN, INTERNALIN B, INTERNALIN C

Molecule 2 - DYNAMIN-BINDING PROTEIN
	Chains	:	B, D, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Variant	:	CODONPLUS
	Expression System Vector	:	PGEX-6P-1
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL SH3 DOMAIN OF TUBA, RESIDUES 1513-1577
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TUBA SH3-6, SCAFFOLD PROTEIN TUBA

Molecule 3 - INLC PROTEIN
	Chains	:	C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET21A
	Expression System Vector Type	:	PLASMID
	Fragment	:	INTERNALIN DOMAIN, RESIDUES 35-297
	Mutation	:	YES
	Organism Scientific	:	LISTERIA MONOCYTOGENES EGD-E
	Organism Taxid	:	169963
	Synonym	:	INLC, INTERNALIN, INTERNALIN B, INTERNALIN C

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 24)

No.	Name	Count	Type	Full Name
1	CL	6	Ligand/Ion	CHLORIDE ION
2	CSX	8	Mod. Amino Acid	S-OXY CYSTEINE
3	GOL	5	Ligand/Ion	GLYCEROL
4	PE4	1	Ligand/Ion	2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5	PO4	2	Ligand/Ion	PHOSPHATE ION
6	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CSX	3	Mod. Amino Acid	S-OXY CYSTEINE
3	GOL	2	Ligand/Ion	GLYCEROL
4	PE4	-1	Ligand/Ion	2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5	PO4	-1	Ligand/Ion	PHOSPHATE ION
6	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 7)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CSX	2	Mod. Amino Acid	S-OXY CYSTEINE
3	GOL	2	Ligand/Ion	GLYCEROL
4	PE4	1	Ligand/Ion	2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5	PO4	-1	Ligand/Ion	PHOSPHATE ION
6	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CSX	3	Mod. Amino Acid	S-OXY CYSTEINE
3	GOL	1	Ligand/Ion	GLYCEROL
4	PE4	-1	Ligand/Ion	2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5	PO4	2	Ligand/Ion	PHOSPHATE ION
6	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:277 , SER C:275 , SER E:275	binding site for residue GOL A 301
02	AC2	SOFTWARE	ARG A:153 , LYS A:173 , GLU A:195	binding site for residue CL A 302
03	AC3	SOFTWARE	GLU B:1531 , ASP B:1547 , TYR B:1565 , HOH B:1701	binding site for residue GOL B 1601
04	AC4	SOFTWARE	LYS A:162 , VAL C:178 , ASN C:198 , GLY C:200 , GLY C:240	binding site for residue GOL C 301
05	AC5	SOFTWARE	ASN C:127 , ARG C:128 , ASP C:148 , ASN C:149 , ARG C:170 , ASN C:171 , HIS C:192 , GLY C:215 , ALA D:1578 , GOL D:1601	binding site for residue PE4 C 302
06	AC6	SOFTWARE	ASP A:154 , ASP A:156 , HIS C:160 , LYS C:162 , HOH C:404	binding site for residue SO4 C 303
07	AC7	SOFTWARE	ASP C:83 , HIS C:103 , SER C:105 , SER C:125 , GLU D:1553 , ASN D:1569	binding site for residue SO4 C 304
08	AC8	SOFTWARE	ASN C:79 , HIS C:103	binding site for residue CL C 305
09	AC9	SOFTWARE	LYS C:173 , GLU C:195	binding site for residue CL C 306
10	AD1	SOFTWARE	ARG C:170 , PE4 C:302 , SER D:1568 , ASN D:1569 , ILE D:1571 , ARG D:1572	binding site for residue GOL D 1601
11	AD2	SOFTWARE	LYS D:1525 , ARG D:1527	binding site for residue CL D 1602
12	AD3	SOFTWARE	ASP E:148 , ASN E:149 , ARG E:170 , ASN E:171 , HOH E:430	binding site for residue PO4 E 301
13	AD4	SOFTWARE	ARG E:153 , LYS E:173 , GLU E:195	binding site for residue PO4 E 302
14	AD5	SOFTWARE	GLU F:1553 , TRP F:1555 , SER F:1568 , ASN F:1569 , ARG F:1572	binding site for residue GOL F 1601
15	AD6	SOFTWARE	TYR F:1576	binding site for residue CL F 1602

(no "SS Bond" information available for 4CC4)

(no "Cis Peptide Bond" information available for 4CC4)

(no "SAP(SNP)/Variant" information available for 4CC4)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SH3	PS50002	Src homology 3 (SH3) domain profile.	DNMBP_HUMAN	2-61 66-126 145-204 243-302 1513-1576	2	- - - - B:1513-1576 F:1513-1576

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SH3	PS50002	Src homology 3 (SH3) domain profile.	DNMBP_HUMAN	2-61 66-126 145-204 243-302 1513-1576	1	- - - - B:1513-1576 -

Biological Unit 2 (, 0)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SH3	PS50002	Src homology 3 (SH3) domain profile.	DNMBP_HUMAN	2-61 66-126 145-204 243-302 1513-1576	0	- - - - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SH3	PS50002	Src homology 3 (SH3) domain profile.	DNMBP_HUMAN	2-61 66-126 145-204 243-302 1513-1576	1	- - - - - F:1513-1576

Asymmetric Unit (2, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000324109	1	ENSE00001424407	chr10:101769676-101769595	82	DNMBP_HUMAN	-	0	0	-	-
1.2	ENST00000324109	2	ENSE00002142171	chr10:101731891-101731737	155	DNMBP_HUMAN	1-49	49	0	-	-
1.3	ENST00000324109	3	ENSE00001706506	chr10:101728994-101728872	123	DNMBP_HUMAN	49-90	42	0	-	-
1.4	ENST00000324109	4	ENSE00001719112	chr10:101716962-101714971	1992	DNMBP_HUMAN	90-754	665	0	-	-
1.6	ENST00000324109	6	ENSE00001756411	chr10:101668903-101668710	194	DNMBP_HUMAN	754-818	65	0	-	-
1.7	ENST00000324109	7	ENSE00001121904	chr10:101667851-101667752	100	DNMBP_HUMAN	819-852	34	0	-	-
1.8	ENST00000324109	8	ENSE00001121895	chr10:101659823-101659676	148	DNMBP_HUMAN	852-901	50	0	-	-
1.10	ENST00000324109	10	ENSE00001805771	chr10:101658517-101658500	18	DNMBP_HUMAN	901-907	7	0	-	-
1.12b	ENST00000324109	12b	ENSE00002155272	chr10:101658042-101657843	200	DNMBP_HUMAN	907-974	68	0	-	-
1.13b	ENST00000324109	13b	ENSE00001668127	chr10:101656154-101656024	131	DNMBP_HUMAN	974-1017	44	0	-	-
1.14	ENST00000324109	14	ENSE00001784342	chr10:101654807-101654703	105	DNMBP_HUMAN	1018-1052	35	0	-	-
1.15b	ENST00000324109	15b	ENSE00001699707	chr10:101648710-101648582	129	DNMBP_HUMAN	1053-1095	43	0	-	-
1.16b	ENST00000324109	16b	ENSE00001760747	chr10:101646389-101646057	333	DNMBP_HUMAN	1096-1206	111	0	-	-
1.17	ENST00000324109	17	ENSE00001671273	chr10:101645623-101645444	180	DNMBP_HUMAN	1207-1266	60	0	-	-
1.18	ENST00000324109	18	ENSE00001705620	chr10:101643966-101643768	199	DNMBP_HUMAN	1267-1333	67	0	-	-
1.19	ENST00000324109	19	ENSE00001624505	chr10:101640118-101639568	551	DNMBP_HUMAN	1333-1516	184	3	B:1511-1516 (gaps) D:1515-1516 F:1511-1516 (gaps)	8 2 8
1.20	ENST00000324109	20	ENSE00001621278	chr10:101637093-101635334	1760	DNMBP_HUMAN	1517-1577	61	3	B:1517-1577 D:1517-1577 F:1517-1577	61 61 61

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:265
 aligned with P71451_LISMN | P71451 from UniProtKB/TrEMBL  Length:297

    Alignment length:265
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292     
        P71451_LISMN     33 QAESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  297
               SCOP domains d4cc4a1 A:33-219 automated matches                                                                                                                                                         d4cc4a2 A:220-297 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhh.hhhhhhhhhhhhh......eehhhhhhh..eee..........hhhhh....eee........hhhhh......eee..................eee........hhhhh......eee........hhhhhhh....eee..........hhhhh....eeeeeeeeee........eeeee..............ee.hhheee..eeeee......eeeeeeeeeeee..eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cc4 A   33 ASESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAcLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKcVNEPVKYQPELYITNTVKDPDGRWISPAAISNGGSYVDGcVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  297
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212     | 222       232       242       252     | 262       272       282       292     
                                                                                                                                      141-CSX                                                                      218-CSX                                 258-CSX

Chain A from PDB  Type:PROTEIN  Length:265
 aligned with Q8Y6A8_LISMO | Q8Y6A8 from UniProtKB/TrEMBL  Length:296

    Alignment length:265
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     
        Q8Y6A8_LISMO     32 QAESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  296
               SCOP domains d4cc4a1 A:33-219 automated matches                                                                                                                                                         d4cc4a2 A:220-297 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhh.hhhhhhhhhhhhh......eehhhhhhh..eee..........hhhhh....eee........hhhhh......eee..................eee........hhhhh......eee........hhhhhhh....eee..........hhhhh....eeeeeeeeee........eeeee..............ee.hhheee..eeeee......eeeeeeeeeeee..eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cc4 A   33 ASESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAcLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKcVNEPVKYQPELYITNTVKDPDGRWISPAAISNGGSYVDGcVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  297
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212     | 222       232       242       252     | 262       272       282       292     
                                                                                                                                      141-CSX                                                                      218-CSX                                 258-CSX

Chain B from PDB  Type:PROTEIN  Length:68
 aligned with DNMBP_HUMAN | Q6XZF7 from UniProtKB/Swiss-Prot  Length:1577

    Alignment length:70
                                                                                             1577 
                                  1518      1528      1538      1548      1558      1568        |-
         DNMBP_HUMAN   1509 GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTEYT-    -
               SCOP domains d4  cc4b_ B: automated matches                                         SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--....eeee..................eeeeee.........eeeeee..eeeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----SH3  PDB: B:1513-1576 UniProt: 1513-1576                        -- PROSITE
               Transcript 1 1.19    Exon 1.20  PDB: B:1517-1577 UniProt: 1517-1577               - Transcript 1
                4cc4 B 1511 GP--EGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTEYTA 1578
                             |  | 1518      1528      1538      1548      1558      1568      1578
                             |  |                                                                 
                          1512  |                                                                 
                             1513

Chain C from PDB  Type:PROTEIN  Length:265
 aligned with P71451_LISMN | P71451 from UniProtKB/TrEMBL  Length:297

    Alignment length:265
                                                                                                                                                                                                                                                                                                 297 
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293   | 
        P71451_LISMN     34 AESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN-    -
               SCOP domains d4cc4c1 C:34-219 automated matches                                                                                                                                                        d4cc4c2 C:220-298 automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhh.hhhhhhhhhhhh.......eehhhhhhh..eee..........hhhhh....eee........hhhhh......eee..................eee........hhhhh......eee..........hhhhh....eee..........hhhhh....eeeeeeeeee...ee...eeeee..............ee.hhheee..eeeee......eeeeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cc4 C   34 SESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAcLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKcVNEPVKYQPELYITNTVKDPDGRWISPAAISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKNK  298
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213    |  223       233       243       253       263       273       283       293     
                                                                                                                                     141-CSX                                                                      218-CSX

Chain C from PDB  Type:PROTEIN  Length:265
 aligned with Q8Y6A8_LISMO | Q8Y6A8 from UniProtKB/TrEMBL  Length:296

    Alignment length:265
                                                                                                                                                                                                                                                                                                 296 
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292   | 
        Q8Y6A8_LISMO     33 AESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN-    -
               SCOP domains d4cc4c1 C:34-219 automated matches                                                                                                                                                        d4cc4c2 C:220-298 automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhh.hhhhhhhhhhhh.......eehhhhhhh..eee..........hhhhh....eee........hhhhh......eee..................eee........hhhhh......eee..........hhhhh....eee..........hhhhh....eeeeeeeeee...ee...eeeee..............ee.hhheee..eeeee......eeeeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cc4 C   34 SESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAcLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKcVNEPVKYQPELYITNTVKDPDGRWISPAAISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKNK  298
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213    |  223       233       243       253       263       273       283       293     
                                                                                                                                     141-CSX                                                                      218-CSX

Chain D from PDB  Type:PROTEIN  Length:64
 aligned with DNMBP_HUMAN | Q6XZF7 from UniProtKB/Swiss-Prot  Length:1577

    Alignment length:64
                                                                                       1577 
                                  1524      1534      1544      1554      1564      1574  | 
         DNMBP_HUMAN   1515 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTEYT-    -
               SCOP domains d4cc4d_ D: automated matches                                     SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.................eeeeeee.........eeeee....eeeee...eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SH3  PDB: - UniProt: 1513-1576                                -- PROSITE
               Transcript 1 1.Exon 1.20  PDB: D:1517-1577 UniProt: 1517-1577               - Transcript 1
                4cc4 D 1515 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTEYTA 1578
                                  1524      1534      1544      1554      1564      1574

Chain E from PDB  Type:PROTEIN  Length:263
 aligned with P71451_LISMN | P71451 from UniProtKB/TrEMBL  Length:297

    Alignment length:263
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294   
        P71451_LISMN     35 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  297
               SCOP domains d4cc4e1 E:35-219 automated matches                                                                                                                                                       d4cc4e2 E:220-297 automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhh.......eehhhhhhhh.eee..........hhhhh....eee........hhhhh......eee..................eee........hhhhh......eee........hhhhhhh....eee........hhhhhhh....eeeeeeeeee.........eeee..............ee....eee..eeee.......eeeeeeeeeeee..eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cc4 E   35 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAcLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKcVNEPVKYQPELYITNTVKDPDGRWISPAAISNGGSYVDGcVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  297
                                    44        54        64        74        84        94       104       114       124       134      |144       154       164       174       184       194       204       214   |   224       234       244       254   |   264       274       284       294   
                                                                                                                                    141-CSX                                                                      218-CSX                                 258-CSX

Chain E from PDB  Type:PROTEIN  Length:263
 aligned with Q8Y6A8_LISMO | Q8Y6A8 from UniProtKB/TrEMBL  Length:296

    Alignment length:263
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293   
        Q8Y6A8_LISMO     34 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  296
               SCOP domains d4cc4e1 E:35-219 automated matches                                                                                                                                                       d4cc4e2 E:220-297 automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhh.......eehhhhhhhh.eee..........hhhhh....eee........hhhhh......eee..................eee........hhhhh......eee........hhhhhhh....eee........hhhhhhh....eeeeeeeeee.........eeee..............ee....eee..eeee.......eeeeeeeeeeee..eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cc4 E   35 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAcLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKcVNEPVKYQPELYITNTVKDPDGRWISPAAISNGGSYVDGcVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIKN  297
                                    44        54        64        74        84        94       104       114       124       134      |144       154       164       174       184       194       204       214   |   224       234       244       254   |   264       274       284       294   
                                                                                                                                    141-CSX                                                                      218-CSX                                 258-CSX

Chain F from PDB  Type:PROTEIN  Length:68
 aligned with DNMBP_HUMAN | Q6XZF7 from UniProtKB/Swiss-Prot  Length:1577

    Alignment length:70
                                                                                             1577 
                                  1518      1528      1538      1548      1558      1568        |-
         DNMBP_HUMAN   1509 GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTEYT-    -
               SCOP domains d4  cc4f_ F: automated matches                                         SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--.....eee..................eeeeee.........eeeeee..eeeeee...eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----SH3  PDB: F:1513-1576 UniProt: 1513-1576                        -- PROSITE
               Transcript 1 1.19    Exon 1.20  PDB: F:1517-1577 UniProt: 1517-1577               - Transcript 1
                4cc4 F 1511 GP--EGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTEYTA 1578
                             |  | 1518      1528      1538      1548      1558      1568      1578
                          1512  |                                                                 
                             1513

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 4CC4)

(no "Pfam Domain" information available for 4CC4)

Asymmetric Unit(hide GO term definitions)

Chain A,C,E (P71451_LISMN | P71451)

Chain A,C,E (Q8Y6A8_LISMO | Q8Y6A8)

Chain B,D,F (DNMBP_HUMAN | Q6XZF7)

molecular function
	GO:0005089	Rho guanyl-nucleotide exchange factor activity	Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
	GO:0005085	guanyl-nucleotide exchange factor activity	Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0035556	intracellular signal transduction	The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
	GO:0043547	positive regulation of GTPase activity	Any process that activates or increases the activity of a GTPase.
	GO:0035023	regulation of Rho protein signal transduction	Any process that modulates the frequency, rate or extent of Rho protein signal transduction.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0005795	Golgi stack	The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0045202	synapse	The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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	Cis Peptide Bonds
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	4cc4
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	P71451_LISMN \| P71451
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	DNMBP_HUMAN \| Q6XZF7	:	1ug1 1uhc 4cc2 4cc3 4cc7 4glm
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	Q8Y6A8_LISMO \| Q8Y6A8	:	1xeu

4cc2	COMPLEX OF HUMAN TUBA C-TERMINAL SH3 DOMAIN WITH HUMAN N-WASP PROLINE-RICH PEPTIDE - P212121
4cc3	COMPLEX OF HUMAN TUBA C-TERMINAL SH3 DOMAIN AND MENA PROLINE-RICH PEPTIDE - H3

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 24)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (2, 6)

Sequences/Alignments

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SCOP Domains (3, 9)

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Pfam Domains (0, 0)

Gene Ontology (12, 12)

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Related Entries Specified in the PDB File