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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SH3 DOMAIN OF DNMBP PROTEIN [HOMO SAPIENS]
 
Authors :  A. Dong, X. Guan, H. Huang, W. Tempel, J. Gu, S. Sidhu, C. Bountra, C. H. Ar A. M. Edwards, Y. Tong, Structural Genomics Consortium (Sgc)
Date :  14 Aug 12  (Deposition) - 21 Nov 12  (Release) - 21 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Sh3 Domain, Dnmbp, Structural Genomics, Structural Genomics Consortium, Sgc, Src Homology 3 Domains, Cell Junctions, Dynamin Binding, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Guan, A. Dong, H. Huang, W. Tempel, J. Gu, S. Sidhu, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong
Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [Homo Sapiens]
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DYNAMIN-BINDING PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHH0239
    Expression System Strain: BL21-V2R-PRARE2
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 246-301
    Gene: DNMBP, KIAA1010
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SCAFFOLD PROTEIN TUBA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric Unit (1, 18)
No.NameCountTypeFull Name
1UNX18Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1UNX8Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1UNX6Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1UNX3Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1UNX1Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (0, 0)

(no "Site" information available for 4GLM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GLM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GLM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GLM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GLM)

(-) Exons   (0, 0)

(no "Exon" information available for 4GLM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains d4glma_ A: automated matches                               SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..................eeeeeee....eeeeee..eeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 4glm A 245 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA 302
                                   254       264       274       284       294        


Chain B from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains d4glmb_ B: automated matches                              SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..................eeeeeee....eeeeee..eeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 4glm B 245 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP 301
                                   254       264       274       284       294       


Chain C from PDB  Type:PROTEIN  Length:56
                                                                                        
               SCOP domains d4glmc_ C: automated matches                             SCOP domains
               CATH domains -------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..................eeeeeee....eeeeee..eeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 4glm C 246 TYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP 301
                                   255       265       275       285       295      


Chain D from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains d4glmd_ D: automated matches                              SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..................eeeeeee....eeeeee..eeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 4glm D 245 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP 301
                                   254       264       274       284       294
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GLM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GLM)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        DNMBP_HUMAN | Q6XZF7: 1ug1 1uhc 4cc2 4cc3 4cc4 4cc7

(-) Related Entries Specified in the PDB File

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