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(-) Description

Title :  COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
 
Authors :  H. Staudt, M. Hoesl, A. Dreuw, S. Serdjukow, D. Oesterhelt, N. Budisa, J. Wachtveitl, M. Grininger
Date :  16 Jul 12  (Deposition) - 17 Jul 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Flavoprotein, Incorporation Of Artificial (Non-Canonical) Amino Acids, Protein Reaction Control (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Staudt, M. G. Hoesl, A. Dreuw, S. Serdjukow, D. Oesterhelt, N. Budisa, J. Wachtveitl, M. Grininger
Directed Manipulation Of A Flavoprotein Photocycle.
Angew. Chem. Int. Ed. Engl. V. 52 8463 2013
PubMed-ID: 23818044  |  Reference-DOI: 10.1002/ANIE.201302334

(-) Compounds

Molecule 1 - DODECIN
    Atcc: 49980
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE80L
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: HALOBACTERIUM SALINARUM
    Organism Taxid: 478009
    Other Details: TRYPTOPHAN 36 EXCHANGED BY 4-AMINO-L-TRYPTOPHAN, RIBOFLAVIN BOUND
    Other Details - Source: GERMAN COLLECTION OF MICROORGANISMS (DSM 671)
    Strain: R1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 7)

Asymmetric Unit (6, 7)
No.NameCountTypeFull Name
14IN1Mod. Amino Acid4-AMINO-L-TRYPTOPHAN
2CL1Ligand/IonCHLORIDE ION
3MG2Ligand/IonMAGNESIUM ION
4NA1Ligand/IonSODIUM ION
5RBF1Ligand/IonRIBOFLAVIN
6SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 36)
No.NameCountTypeFull Name
14IN12Mod. Amino Acid4-AMINO-L-TRYPTOPHAN
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
4NA-1Ligand/IonSODIUM ION
5RBF12Ligand/IonRIBOFLAVIN
6SO412Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:14 , HOH A:2025 , HOH A:2026 , HOH A:2032 , HOH A:2083BINDING SITE FOR RESIDUE MG A 101
2AC2SOFTWAREASP A:41 , HOH A:2090 , HOH A:2091 , HOH A:2092 , HOH A:2093BINDING SITE FOR RESIDUE MG A 102
3AC3SOFTWARECL A:104 , HOH A:2094 , HOH A:2095BINDING SITE FOR RESIDUE NA A 103
4AC4SOFTWAREGLN A:59 , NA A:103 , HOH A:2042BINDING SITE FOR RESIDUE CL A 104
5AC5SOFTWARESER A:15 , PHE A:16 , THR A:17 , HOH A:2096 , HOH A:2097BINDING SITE FOR RESIDUE SO4 A 300
6AC6SOFTWARE4IN A:36 , VAL A:44 , GLU A:45 , GLN A:55 , HOH A:2091 , HOH A:2098 , HOH A:2099 , HOH A:2100BINDING SITE FOR RESIDUE RBF A1067

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4B2K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4B2K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:64
 aligned with DODEC_HALS3 | B0R5M0 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:64
                                    11        21        31        41        51        61    
           DODEC_HALS3    2 VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAVEERTYQTEVQVAFELD 65
               SCOP domains d4b2ka_ A: automated matches                                     SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeee.......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  4b2k A  2 VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVwAEVVDQGVEIGAVEERTYQTEVQVAFELD 65
                                    11        21        31    |   41        51        61    
                                                             36-4IN
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4B2K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4B2K)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (DODEC_HALS3 | B0R5M0)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DODEC_HALS3 | B0R5M0: 1mog 2cc6 2cc7 2cc8 2cc9 2ccb 2ccc 2cie 2cif 2cjc 2vkf 2vkg 2vx9 4b2h 4b2j 4b2m

(-) Related Entries Specified in the PDB File

2cc8 COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
2ccb COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
2vx9 H. SALINARUM DODECIN E45A MUTANT
4b2h COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
4b2j COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
4b2m COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS