4AUO - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MMP-1(E200A) IN COMPLEX WITH A TRIPLE-HELICAL COLLAGEN PEPTIDE

Authors :   S. W. Manka, F. Carafoli, R. Visse, D. Bihan, N. Raynal, R. W. Farndale, G J. J. Enghild, E. Hohenester, H. Nagase

Date :   18 May 12 (Deposition) - 11 Jul 12 (Release) - 15 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C,D,E  (1x)
Biol. Unit 2: B,F,G,H  (1x)

Keywords :   Hydrolase-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. W. Manka, F. Carafoli, R. Visse, D. Bihan, N. Raynal, R. W. Farndale, G. Murphy, J. J. Enghild, E. Hohenester, H. Nagase
Structural Insights Into Triple-Helical Collagen Cleavage By Matrix Metalloproteinase 1
Proc. Natl. Acad. Sci. Usa V. 109 12461 2012
PubMed-ID: 22761315 | Reference-DOI: 10.1073/PNAS.1204991109

Molecule 1 - INTERSTITIAL COLLAGENASE
	Chains	:	A, B
	EC Number	:	3.4.24.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FIBROBLAST COLLAGENASE, MATRIX METALLOPROTEINASE-1,MMP-1,22 KDA INTERSTITIAL COLLAGENASE, 27 KDA INTERSTITIAL COLLAGENASE

Molecule 2 - TRIPLE-HELICAL COLLAGEN PEPTIDE
	Chains	:	C, D, E, F, G, H
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A		C	D	E
Biological Unit 2 (1x)	:		B				F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 47)

No.	Name	Count	Type	Full Name
1	CA	8	Ligand/Ion	CALCIUM ION
2	HYP	35	Mod. Amino Acid	4-HYDROXYPROLINE
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 18)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	HYP	18	Mod. Amino Acid	4-HYDROXYPROLINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 17)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	HYP	17	Mod. Amino Acid	4-HYDROXYPROLINE
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:105 , ARG A:146 , GLU A:180 , GLU A:182	BINDING SITE FOR RESIDUE CA A1101
02	AC2	SOFTWARE	ASP A:266 , GLU A:310 , ASP A:359 , ASP A:408	BINDING SITE FOR RESIDUE CA A1102
03	AC3	SOFTWARE	ASP A:139 , GLY A:171 , GLY A:173 , ASP A:175	BINDING SITE FOR RESIDUE CA A1103
04	AC4	SOFTWARE	ASP A:156 , GLY A:157 , GLY A:159 , ASN A:161 , ASP A:179 , GLU A:182	BINDING SITE FOR RESIDUE CA A1104
05	AC5	SOFTWARE	HIS A:149 , ASP A:151 , HIS A:164 , HIS A:177	BINDING SITE FOR RESIDUE ZN A1201
06	AC6	SOFTWARE	HIS A:199 , HIS A:203 , HIS A:209	BINDING SITE FOR RESIDUE ZN A1202
07	AC7	SOFTWARE	ASP B:105 , GLU B:180 , GLU B:182	BINDING SITE FOR RESIDUE CA B1101
08	AC8	SOFTWARE	ASP B:266 , GLU B:310 , ASP B:359 , ASP B:408	BINDING SITE FOR RESIDUE CA B1102
09	AC9	SOFTWARE	ASP B:139 , GLY B:171 , GLY B:173 , ASP B:175	BINDING SITE FOR RESIDUE CA B1103
10	BC1	SOFTWARE	ASP B:156 , GLY B:157 , GLY B:159 , ASN B:161 , ASP B:179 , GLU B:182	BINDING SITE FOR RESIDUE CA B1104
11	BC2	SOFTWARE	HIS B:149 , ASP B:151 , HIS B:164 , HIS B:177	BINDING SITE FOR RESIDUE ZN B1201
12	BC3	SOFTWARE	HIS B:199 , HIS B:203 , HIS B:209	BINDING SITE FOR RESIDUE ZN B1202

Asymmetric Unit

No.	Residues
1	A:259	-	A:447
2	B:259	-	B:447

Asymmetric Unit

No.	Residues
1	Tyr A:341	-	Pro A:342
2	Tyr B:341	-	Pro B:342

Asymmetric Unit (5, 10)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021024	I	191	V	MMP1_HUMAN	Polymorphism	17879973	A/B	I	172	V
2	UniProt	VAR_011970	D	252	G	MMP1_HUMAN	Polymorphism	513964	A/B	D	233	G
3	UniProt	VAR_054005	R	262	S	MMP1_HUMAN	Polymorphism	12282811	A/B	R	243	S
4	UniProt	VAR_021025	R	405	Q	MMP1_HUMAN	Polymorphism	17879165	A/B	R	386	Q
5	UniProt	VAR_021026	S	406	T	MMP1_HUMAN	Polymorphism	17884120	A/B	S	387	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021024	I	191	V	MMP1_HUMAN	Polymorphism	17879973	A	I	172	V
2	UniProt	VAR_011970	D	252	G	MMP1_HUMAN	Polymorphism	513964	A	D	233	G
3	UniProt	VAR_054005	R	262	S	MMP1_HUMAN	Polymorphism	12282811	A	R	243	S
4	UniProt	VAR_021025	R	405	Q	MMP1_HUMAN	Polymorphism	17879165	A	R	386	Q
5	UniProt	VAR_021026	S	406	T	MMP1_HUMAN	Polymorphism	17884120	A	S	387	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021024	I	191	V	MMP1_HUMAN	Polymorphism	17879973	B	I	172	V
2	UniProt	VAR_011970	D	252	G	MMP1_HUMAN	Polymorphism	513964	B	D	233	G
3	UniProt	VAR_054005	R	262	S	MMP1_HUMAN	Polymorphism	12282811	B	R	243	S
4	UniProt	VAR_021025	R	405	Q	MMP1_HUMAN	Polymorphism	17879165	B	R	386	Q
5	UniProt	VAR_021026	S	406	T	MMP1_HUMAN	Polymorphism	17884120	B	S	387	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP1_HUMAN	215-224	2	A:196-205 B:196-205
2	HEMOPEXIN_2	PS51642	Hemopexin repeat profile.	MMP1_HUMAN	275-324 325-371 374-422 423-466	8	A:256-305 B:256-305 A:306-352 B:306-352 A:355-403 B:355-403 A:404-447 B:404-447
3	HEMOPEXIN	PS00024	Hemopexin domain signature.	MMP1_HUMAN	317-332	2	A:298-313 B:298-313

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP1_HUMAN	215-224	1	A:196-205 -
2	HEMOPEXIN_2	PS51642	Hemopexin repeat profile.	MMP1_HUMAN	275-324 325-371 374-422 423-466	4	A:256-305 - A:306-352 - A:355-403 - A:404-447 -
3	HEMOPEXIN	PS00024	Hemopexin domain signature.	MMP1_HUMAN	317-332	1	A:298-313 -

Biological Unit 2 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP1_HUMAN	215-224	1	- B:196-205
2	HEMOPEXIN_2	PS51642	Hemopexin repeat profile.	MMP1_HUMAN	275-324 325-371 374-422 423-466	4	- B:256-305 - B:306-352 - B:355-403 - B:404-447
3	HEMOPEXIN	PS00024	Hemopexin domain signature.	MMP1_HUMAN	317-332	1	- B:298-313

Asymmetric Unit (9, 18)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000315274	1	ENSE00001234609	chr11:102668891-102668719	173	MMP1_HUMAN	1-35	35	0	-	-
1.2	ENST00000315274	2	ENSE00000993211	chr11:102668231-102667987	245	MMP1_HUMAN	36-117	82	2	A:81-98 B:81-98	18 18
1.3	ENST00000315274	3	ENSE00000993213	chr11:102667893-102667745	149	MMP1_HUMAN	117-167	51	2	A:98-148 B:98-148	51 51
1.4	ENST00000315274	4	ENSE00001105440	chr11:102667520-102667395	126	MMP1_HUMAN	167-209	43	2	A:148-190 B:148-190	43 43
1.5	ENST00000315274	5	ENSE00000993197	chr11:102666338-102666183	156	MMP1_HUMAN	209-261	53	2	A:190-242 B:190-242	53 53
1.6	ENST00000315274	6	ENSE00000993183	chr11:102666022-102665905	118	MMP1_HUMAN	261-300	40	2	A:242-281 B:242-281	40 40
1.7	ENST00000315274	7	ENSE00000993195	chr11:102663469-102663336	134	MMP1_HUMAN	300-345	46	2	A:281-326 B:281-326	46 46
1.8	ENST00000315274	8	ENSE00000993199	chr11:102662226-102662064	163	MMP1_HUMAN	345-399	55	2	A:326-380 B:326-380	55 55
1.9	ENST00000315274	9	ENSE00000993204	chr11:102661537-102661434	104	MMP1_HUMAN	399-434	36	2	A:380-415 B:380-415	36 36
1.10	ENST00000315274	10	ENSE00001234621	chr11:102661252-102660651	602	MMP1_HUMAN	434-469	36	2	A:415-447 B:415-447	33 33

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:367
 aligned with MMP1_HUMAN | P03956 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:367
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       
          MMP1_HUMAN    100 FVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNC  466
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..........eeeee........hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhhhhhhhee.....................hhhhhhhhhhhh.........................eeehhhhheeeee..eeeee.......eeee.hhh.........eeeeehhhheeeeee..eeeeee..ee.....eehhhhhh.........eeee.....eeeeee..eeeeee....ee.....eehhhhh........eeeee..eeeeee..eeeeee....eeeeeee.hhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V------------------------------------------------------------G---------S----------------------------------------------------------------------------------------------------------------------------------------------QT------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------------HEMOPEXIN_2  PDB: A:256-305 UniProt: 275-324      HEMOPEXIN_2  PDB: A:306-352 UniProt: 325-371   --HEMOPEXIN_2  PDB: A:355-403 UniProt: 374-422     HEMOPEXIN_2  PDB: A:404-447 UniProt: 423-466 PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HEMOPEXIN       -------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2          -------------------------------------------------Exon 1.4  PDB: A:148-190 UniProt: 167-209  ---------------------------------------------------Exon 1.6  PDB: A:242-281                --------------------------------------------Exon 1.8  PDB: A:326-380 UniProt: 345-399              ----------------------------------Exon 1.10  PDB: A:415-447         Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.3  PDB: A:98-148 UniProt: 117-167           -----------------------------------------Exon 1.5  PDB: A:190-242 UniProt: 209-261            --------------------------------------Exon 1.7  PDB: A:281-326 UniProt: 300-345     -----------------------------------------------------Exon 1.9  PDB: A:380-415            -------------------------------- Transcript 1 (2)
                4auo A   81 FVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHALGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNC  447
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440

Chain B from PDB  Type:PROTEIN  Length:367
 aligned with MMP1_HUMAN | P03956 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:367
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       
          MMP1_HUMAN    100 FVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNC  466
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhhhhh..ee.....................hhhhhhhhhhhh.........................eee.....eeeee..eeeee.......eeee.hhh.........eeeeehhhheeeeee..eeeeee..ee.....eehhhhh..........eeee.....eeeeee..eeeeee....ee.....eehhhhh........eeeee..eeeeee..eeeeee....eeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V------------------------------------------------------------G---------S----------------------------------------------------------------------------------------------------------------------------------------------QT------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------------HEMOPEXIN_2  PDB: B:256-305 UniProt: 275-324      HEMOPEXIN_2  PDB: B:306-352 UniProt: 325-371   --HEMOPEXIN_2  PDB: B:355-403 UniProt: 374-422     HEMOPEXIN_2  PDB: B:404-447 UniProt: 423-466 PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HEMOPEXIN       -------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2          -------------------------------------------------Exon 1.4  PDB: B:148-190 UniProt: 167-209  ---------------------------------------------------Exon 1.6  PDB: B:242-281                --------------------------------------------Exon 1.8  PDB: B:326-380 UniProt: 345-399              ----------------------------------Exon 1.10  PDB: B:415-447         Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.3  PDB: B:98-148 UniProt: 117-167           -----------------------------------------Exon 1.5  PDB: B:190-242 UniProt: 209-261            --------------------------------------Exon 1.7  PDB: B:281-326 UniProt: 300-345     -----------------------------------------------------Exon 1.9  PDB: B:380-415            -------------------------------- Transcript 1 (2)
                4auo B   81 FVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHALGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNC  447
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440

Chain C from PDB  Type:PROTEIN  Length:39
                                                                        
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                4auo C  963 GPpGPpGPpGPQGLAGQRGIVGLpGQRGERGPpGPpGPp 1001
                              |  | 972       982   |   992  |  |  |
                            965-HYP |            986-HYP  995-HYP |
                               968-HYP                       998-HYP
                                  971-HYP                      1001-HYP

Chain D from PDB  Type:PROTEIN  Length:36
                                                                     
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                4auo D  963 GPpGPpGPpGPQGLAGQRGIVGLpGQRGERGPpGPp  998
                              |  | 972       982   |   992  |  |
                              |  |  |            986-HYP  995-HYP
                            965-HYP |                        998-HYP
                               968-HYP                          
                                  971-HYP

Chain E from PDB  Type:PROTEIN  Length:33
                                                                  
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                4auo E  963 GPpGPpGPpGPQGLAGQRGIVGLpGQRGERGPp  995
                              |  | 972       982   |   992  |
                              |  |  |            986-HYP  995-HYP
                            965-HYP |                        
                               968-HYP                       
                                  971-HYP

Chain F from PDB  Type:PROTEIN  Length:36
                                                                     
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                4auo F  963 GPpGPpGPpGPQGLAGQRGIVGLpGQRGERGPpGPp  998
                              |  | 972       982   |   992  |  |
                              |  |  |            986-HYP  995-HYP
                            965-HYP |                        998-HYP
                               968-HYP                          
                                  971-HYP

Chain G from PDB  Type:PROTEIN  Length:36
                                                                     
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                4auo G  963 GPpGPpGPpGPQGLAGQRGIVGLpGQRGERGPpGPp  998
                              |  | 972       982   |   992  |  |
                              |  |  |            986-HYP  995-HYP
                            965-HYP |                        998-HYP
                               968-HYP                          
                                  971-HYP

Chain H from PDB  Type:PROTEIN  Length:33
                                                                  
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                4auo H  963 GPpGPpGPpGPQGLAGQRGIVGLpGQRGERGPp  995
                              |  | 972       982   |   992  |
                              |  |  |            986-HYP  995-HYP
                            965-HYP |                        
                               968-HYP                       
                                  971-HYP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AUO)

(no "CATH Domain" information available for 4AUO)

(no "Pfam Domain" information available for 4AUO)

Asymmetric Unit(hide GO term definitions)

Chain A,B (MMP1_HUMAN | P03956)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0050900	leukocyte migration	The movement of a leukocyte within or between different tissues and organs of the body.
	GO:0032461	positive regulation of protein oligomerization	Any process that activates or increases the frequency, rate or extent of protein oligomerization.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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	4auo
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UniProtKB/Swiss-Prot
	MMP1_HUMAN \| P03956	:	1ayk 1cge 1cgf 1cgl 1hfc 1su3 2ayk 2clt 2j0t 2tcl 3ayk 3shi 4ayk 966c

1ayk	INHIBITOR-FREE CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE, NMR, 30 STRUCTURES
1cge	COLLAGENASE (CATALYTIC DOMAIN) CRYSTAL FORM I
1cgf	FIBROBLAST COLLAGENASE (CATALYTIC DOMAIN) BINARY COMPLEX ( CRYSTAL FORM II)
1cgl	COLLAGENASE (CATALYTIC DOMAIN)
1hfc	FIBROBLAST COLLAGENASE
1su3	X-RAY STRUCTURE OF HUMAN PROMMP-1: NEW INSIGHTS INTOCOLLAGENASE ACTION
2ayk	INHIBITOR-FREE CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE, NMR, MINIMIZED AVERAGE STRUCTURE
2clt	CRYSTAL STRUCTURE OF THE ACTIVE FORM (FULL-LENGTH) OF HUMAN FIBROBLAST COLLAGENASE.
2j0t	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-1 IN COMPLEX WITH THE INHIBITORY DOMAIN OF TIMP-1
2tcl
3ayk	CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE COMPLEXED WITH CGS-27023A, NMR, MINIMIZED AVERAGE STRUCTURE
4ayk	CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE COMPLEXED WITH CGS-27023A, NMR, 30 STRUCTURES
966c	CRYSTAL STRUCTURE OF FIBROBLAST COLLAGENASE-1 COMPLEXED TO A DIPHENYL-ETHER SULPHONE BASED HYDROXAMIC ACID

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 47)

Sites (12, 12)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (5, 10)

PROSITE Motifs (3, 12)

Exons (9, 18)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

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