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(-) Description

Title :  CRYSTAL STRUCTURE OF FIBROBLAST COLLAGENASE-1 COMPLEXED TO A DIPHENYL-ETHER SULPHONE BASED HYDROXAMIC ACID
 
Authors :  B. Lovejoy, A. Welch, S. Carr, C. Luong, C. Broka, R. T. Hendricks, J. Campbell, K. Walker, R. Martin, H. Van Wart, M. F. Browner
Date :  07 Aug 98  (Deposition) - 07 Aug 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Matrix Metalloprotease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Lovejoy, A. R. Welch, S. Carr, C. Luong, C. Broka, R. T. Hendricks, J. A. Campbell, K. A. Walker, R. Martin, H. Van Wart, M. F. Browner
Crystal Structures Of Mmp-1 And -13 Reveal The Structural Basis For Selectivity Of Collagenase Inhibitors.
Nat. Struct. Biol. V. 6 217 1999
PubMed-ID: 10074939  |  Reference-DOI: 10.1038/6657
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MMP-1
    Chains: A
    EC Number: 3.4.24.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CDNA CONSTRUCT
    Synonym: COLLAGENASE-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2RS21Ligand/IonN-HYDROXY-2-[4-(4-PHENOXY-BENZENESULFONYL)-TETRAHYDRO-PYRAN-4-YL]-ACETAMIDE
3ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARERS2 A:1 , HIS A:218 , HIS A:222 , HIS A:228 , HOH A:297BINDING SITE FOR RESIDUE ZN A 265
2AC2SOFTWAREHIS A:168 , ASP A:170 , HIS A:183 , PHE A:185 , HIS A:196BINDING SITE FOR RESIDUE ZN A 266
3AC3SOFTWAREASP A:175 , GLY A:176 , GLY A:178 , ASN A:180 , ASP A:198 , GLU A:201BINDING SITE FOR RESIDUE CA A 267
4AC4SOFTWAREASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:310 , HOH A:353BINDING SITE FOR RESIDUE CA A 268
5AC5SOFTWAREASP A:124 , GLU A:199 , GLU A:201 , HOH A:278 , HOH A:279BINDING SITE FOR RESIDUE CA A 269
6AC6SOFTWAREASN A:180 , LEU A:181 , ALA A:182 , PHE A:207 , ARG A:208 , GLU A:209 , HIS A:218 , GLU A:219 , HIS A:222 , HIS A:228 , LEU A:235 , TYR A:237 , SER A:239 , TYR A:240 , THR A:241 , ZN A:265 , HOH A:297 , HOH A:336BINDING SITE FOR RESIDUE RS2 A 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 966C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 966C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 966C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 966C)

(-) Exons   (0, 0)

(no "Exon" information available for 966C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains d966ca_ A: Fibroblast collagenase (MMP-1)                                                                                                                     SCOP domains
               CATH domains 966cA00 A:108-264 Collagenase (Catalytic Domain)                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee........hhhhhhhhhhhhhhhhhh...eeee.......eeeeee.................eee..........eeee.............hhhhhhhhhhhh..........................hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 966c A 108 RWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQ 264
                                   117       127       137       147       157       167       177       187       197       207       217       227       237       247       257
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 966C)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 966c)
 

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  966c
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  MMP1_HUMAN | P03956
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  3.4.24.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MMP1_HUMAN | P03956: 1ayk 1cge 1cgf 1cgl 1hfc 1su3 2ayk 2clt 2j0t 2tcl 3ayk 3shi 4auo 4ayk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 966C)