1CGL - JenaLib

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	0ED A:1 , HIS A:218 , HIS A:222 , HIS A:228	BINDING SITE FOR RESIDUE ZN A 301
02	AC2	SOFTWARE	HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196	BINDING SITE FOR RESIDUE ZN A 302
03	AC3	SOFTWARE	ASP A:175 , GLY A:176 , GLY A:178 , ASN A:180 , ASP A:198 , GLU A:201	BINDING SITE FOR RESIDUE CA A 303
04	AC4	SOFTWARE	0ED B:1 , HIS B:218 , HIS B:222 , HIS B:228	BINDING SITE FOR RESIDUE ZN B 301
05	AC5	SOFTWARE	HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196	BINDING SITE FOR RESIDUE ZN B 302
06	AC6	SOFTWARE	ASP B:175 , GLY B:176 , GLY B:178 , ASN B:180 , ASP B:198 , GLU B:201	BINDING SITE FOR RESIDUE CA B 303
07	AC7	SOFTWARE	GLY A:179 , ASN A:180 , LEU A:181 , ALA A:182 , HIS A:183 , ALA A:184 , GLU A:209 , TYR A:210 , HIS A:218 , GLU A:219 , HIS A:222 , HIS A:228 , PRO A:238 , SER A:239 , TYR A:240 , ZN A:301 , 0ED B:1 , GLY B:179 , THR B:230 , PRO B:238	BINDING SITE FOR RESIDUE 0ED A 1
08	AC8	SOFTWARE	0ED A:1 , GLY A:179 , THR A:230 , PRO A:238 , SER B:172 , GLY B:179 , ASN B:180 , LEU B:181 , ALA B:182 , HIS B:183 , ALA B:184 , PHE B:185 , HIS B:218 , GLU B:219 , HIS B:228 , PRO B:238 , SER B:239 , TYR B:240 , ZN B:301	BINDING SITE FOR RESIDUE 0ED B 1
09	CAT	AUTHOR	ZN A:301 , GLY A:179 , ASN A:180 , LEU A:181 , ALA A:182 , GLU A:219 , PRO A:238 , TYR A:240 , ARG A:214 , VAL A:215	CATALYTIC CLEFT FOR CHAIN A
10	CBT	AUTHOR	ZN B:301 , GLY B:179 , ASN B:180 , LEU B:181 , ALA B:182 , GLU B:219 , PRO B:238 , TYR B:240 , ARG B:214 , VAL B:215	CATALYTIC CLEFT FOR CHAIN B

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (3, 6)

Asymmetric Unit (3, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021024	I	191	V	MMP1_HUMAN	Polymorphism	17879973	A/B	I	191	V
2	UniProt	VAR_011970	D	252	G	MMP1_HUMAN	Polymorphism	513964	A/B	D	252	G
3	UniProt	VAR_054005	R	262	S	MMP1_HUMAN	Polymorphism	12282811	A/B	R	262	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (3, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021024	I	191	V	MMP1_HUMAN	Polymorphism	17879973	A	I	191	V
2	UniProt	VAR_011970	D	252	G	MMP1_HUMAN	Polymorphism	513964	A	D	252	G
3	UniProt	VAR_054005	R	262	S	MMP1_HUMAN	Polymorphism	12282811	A	R	262	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (3, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021024	I	191	V	MMP1_HUMAN	Polymorphism	17879973	B	I	191	V
2	UniProt	VAR_011970	D	252	G	MMP1_HUMAN	Polymorphism	513964	B	D	252	G
3	UniProt	VAR_054005	R	262	S	MMP1_HUMAN	Polymorphism	12282811	B	R	262	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (5, 10)

Asymmetric Unit (5, 10)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000315274	1	ENSE00001234609	chr11:102668891-102668719	173	MMP1_HUMAN	1-35	35	0	-	-
1.2	ENST00000315274	2	ENSE00000993211	chr11:102668231-102667987	245	MMP1_HUMAN	36-117	82	2	A:101-117 B:106-117	17 12
1.3	ENST00000315274	3	ENSE00000993213	chr11:102667893-102667745	149	MMP1_HUMAN	117-167	51	2	A:117-167 B:117-167 (gaps)	51 51
1.4	ENST00000315274	4	ENSE00001105440	chr11:102667520-102667395	126	MMP1_HUMAN	167-209	43	2	A:167-209 B:167-209	43 43
1.5	ENST00000315274	5	ENSE00000993197	chr11:102666338-102666183	156	MMP1_HUMAN	209-261	53	2	A:209-261 B:209-261	53 53
1.6	ENST00000315274	6	ENSE00000993183	chr11:102666022-102665905	118	MMP1_HUMAN	261-300	40	2	A:261-268 B:261-265	8 5
1.7	ENST00000315274	7	ENSE00000993195	chr11:102663469-102663336	134	MMP1_HUMAN	300-345	46	0	-	-
1.8	ENST00000315274	8	ENSE00000993199	chr11:102662226-102662064	163	MMP1_HUMAN	345-399	55	0	-	-
1.9	ENST00000315274	9	ENSE00000993204	chr11:102661537-102661434	104	MMP1_HUMAN	399-434	36	0	-	-
1.10	ENST00000315274	10	ENSE00001234621	chr11:102661252-102660651	602	MMP1_HUMAN	434-469	36	0	-	-

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:168
 aligned with MMP1_HUMAN | P03956 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:168
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260        
           MMP1_HUMAN   101 VLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQ 268
               SCOP domains d1cgla_ A: Fibroblast collagenase (MMP-1)                                                                                                                                SCOP domains
               CATH domains 1cglA00 A:101-268 Collagenase (Catalytic Domain)                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeeee..........hhhhhhhhhhhhhhhh..eeeeeee....eeeeeee.................eeee........eeeeee............hhhhhhhhhhhh..........................hhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------V------------------------------------------------------------G---------S------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ZINC_PROTE-------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2         -------------------------------------------------Exon 1.4  PDB: A:167-209 UniProt: 167-209  ---------------------------------------------------Exon 1.6 Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.3  PDB: A:117-167 UniProt: 117-167          -----------------------------------------Exon 1.5  PDB: A:209-261 UniProt: 209-261            ------- Transcript 1 (2)
                 1cgl A 101 VLTEGNPRWEQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFDPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQ 268
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain B from PDB  Type:PROTEIN  Length:157
 aligned with MMP1_HUMAN | P03956 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:160
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265
           MMP1_HUMAN   106 NPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQN 265
               SCOP domains d1cglb_ B: Fibroblast collagenase (MMP-1)                                                                                                                        SCOP domains
               CATH domains 1cglB00 B:106-265 Collagenase (Catalytic Domain   )                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..........hhhhhhhhhhhhhhhh..eeeeee---..eeeeeee.................eeee........eeeeee............hhhhhhhhhhhh..........................hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------V------------------------------------------------------------G---------S--- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------ZINC_PROTE----------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2    -------------------------------------------------Exon 1.4  PDB: B:167-209 UniProt: 167-209  ---------------------------------------------------1.6   Transcript 1 (1)
           Transcript 1 (2) -----------Exon 1.3  PDB: B:117-167 (gaps) UniProt: 117-167   -----------------------------------------Exon 1.5  PDB: B:209-261 UniProt: 209-261            ---- Transcript 1 (2)
                 1cgl B 106 NPRWEQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKV---QADIMISFVRGDHRDNSPFDGPGGNLAHAFDPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQN 265
                                   115       125       135       145      |  -|      165       175       185       195       205       215       225       235       245       255       265
                                                                        152 156

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

Asymmetric Unit(hide GO term definitions)

Chain A,B (MMP1_HUMAN | P03956)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0050900	leukocyte migration	The movement of a leukocyte within or between different tissues and organs of the body.
	GO:0032461	positive regulation of protein oligomerization	Any process that activates or increases the frequency, rate or extent of protein oligomerization.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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	Cis Peptide Bonds
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	1cgl
		Family and Domain Information	:	ProDom \| SYSTERS
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Access by UniProt ID/Accession number
	MMP1_HUMAN \| P03956
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	3.4.24.7
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (10, 10)