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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RUBELLA VIRUS ENVELOPE GLYCOPROTEIN E1 IN POST-FUSION FORM (CRYSTAL FORM II)
 
Authors :  R. M. Dubois, M. C. Vaney, M. A. Tortorici, R. Al Kurdi, G. Barba-Spaeth
Date :  26 Dec 11  (Deposition) - 09 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Keywords :  Viral Protein, Membrane Fusion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Dubois, M. C. Vaney, M. A. Tortorici, R. A. Kurdi, G. Barba-Spaeth T. Krey, F. A. Rey
Functional And Evolutionary Insight From The Crystal Structure Of Rubella Virus Protein E1.
Nature V. 493 552 2013
PubMed-ID: 23292515  |  Reference-DOI: 10.1038/NATURE11741
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - E1 ENVELOPE GLYCOPROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: DROSOPHILA MELANOGASTER
    Expression System Cell Line: SCHNEIDER 2
    Expression System Plasmid: PMT MODIFIED INVITROGEN
    Expression System Taxid: 7227
    Expression System Vector Type: PLASMID
    Fragment: ECTODOMAIN, UNP RESIDUES 583-1017
    Organism Common: RUBELLA VIRUS
    Organism Scientific: RUBELLA VIRUS
    Organism Taxid: 11041
    Other Details: POLYPROTEIN FRAGMENT
    Strain: M33
    Synonym: SPIKE GLYCOPROTEIN E1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 25)

Asymmetric Unit (7, 25)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CA3Ligand/IonCALCIUM ION
3CL1Ligand/IonCHLORIDE ION
4GOL12Ligand/IonGLYCEROL
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (5, 21)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4GOL12Ligand/IonGLYCEROL
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY C:93 , GLY C:94 , TYR C:95 , ALA C:96 , GLN C:97 , LEU C:98 , TYR C:101 , ARG C:342 , GOL C:1438BINDING SITE FOR RESIDUE GOL C1436
02AC2SOFTWAREPRO B:355 , ALA B:356 , LEU B:357 , HOH B:2386 , HIS C:308 , THR C:311 , THR C:312BINDING SITE FOR RESIDUE GOL B1436
03AC3SOFTWAREASN B:103 , PRO B:104 , TYR B:108 , PRO C:121 , PHE C:123BINDING SITE FOR RESIDUE GOL C1437
04AC4SOFTWARETYR C:95 , TYR C:101 , TYR C:112 , ARG C:342 , ALA C:362 , PRO C:363 , GOL C:1436BINDING SITE FOR RESIDUE GOL C1438
05AC5SOFTWAREARG A:217 , HIS A:308 , THR A:311 , THR A:312 , THR C:347 , PRO C:355 , ALA C:356 , LEU C:357 , HOH C:2342BINDING SITE FOR RESIDUE GOL C1439
06AC6SOFTWAREGLY B:77 , THR B:78 , GLN B:79 , ARG B:252 , HOH B:2085 , ALA C:268 , HIS C:298BINDING SITE FOR RESIDUE GOL B1437
07AC7SOFTWARESER B:100 , TYR B:101 , TYR B:108BINDING SITE FOR RESIDUE GOL B1438
08AC8SOFTWARESER C:100 , TYR C:101 , TYR C:108BINDING SITE FOR RESIDUE GOL C1440
09AC9SOFTWARESER A:100 , TYR A:101 , TYR A:108BINDING SITE FOR RESIDUE GOL A1436
10BC1SOFTWARELYS B:110 , HOH B:2119 , HOH B:2123 , ARG C:256 , LEU C:257 , ASP C:262 , HOH C:2119 , HOH C:2242 , HOH C:2343BINDING SITE FOR RESIDUE GOL C1441
11BC2SOFTWAREHOH B:2384 , TRP C:65 , ARG C:285 , LYS C:286BINDING SITE FOR RESIDUE GOL C1442
12BC3SOFTWARESER B:433 , THR B:435 , GLY C:63 , TRP C:65 , VAL C:66 , PRO C:67BINDING SITE FOR RESIDUE GOL C1443
13BC4SOFTWAREASN A:88 , ALA A:89 , ASP A:136 , THR A:137 , ACT A:1438 , HOH A:2118BINDING SITE FOR RESIDUE CA A1437
14BC5SOFTWAREASN B:88 , ALA B:89 , ASP B:136 , THR B:137 , ACT B:1440 , HOH B:2097BINDING SITE FOR RESIDUE CA B1439
15BC6SOFTWAREASN C:88 , ALA C:89 , ASP C:136 , THR C:137 , ACT C:1446 , HOH C:2089BINDING SITE FOR RESIDUE CA C1444
16BC7SOFTWARESER A:313 , ASP A:314 , HOH A:2328 , HOH A:2330 , HOH A:2334 , THR C:387 , ALA C:388BINDING SITE FOR RESIDUE PEG C1445
17BC8SOFTWAREASN A:88 , ASP A:136 , THR A:137 , CA A:1437 , HOH A:2165BINDING SITE FOR RESIDUE ACT A1438
18BC9SOFTWAREASN B:88 , THR B:135 , ASP B:136 , THR B:137 , CA B:1439 , HOH B:2097BINDING SITE FOR RESIDUE ACT B1440
19CC1SOFTWAREASN C:88 , ASP C:136 , THR C:137 , CA C:1444 , HOH C:2134BINDING SITE FOR RESIDUE ACT C1446
20CC2SOFTWAREGLU A:193 , LYS A:325 , GLU B:193 , LYS B:325 , LYS B:327 , GLU C:193 , LYS C:325 , LYS C:327BINDING SITE FOR RESIDUE CL A1439
21CC3SOFTWAREARG A:27 , GLN A:168 , SER A:175 , ASN A:177 , HOH A:2421BINDING SITE FOR MONO-SACCHARIDE NAG A1001 BOUND TO ASN A 177
22CC4SOFTWARETHR A:430 , ALA A:431 , VAL A:432 , THR B:46BINDING SITE FOR MONO-SACCHARIDE NGA A4001 BOUND TO THR A 430
23CC5SOFTWAREARG B:27 , GLN B:168 , SER B:175 , ASN B:177 , HOH B:2385BINDING SITE FOR MONO-SACCHARIDE NAG B1001 BOUND TO ASN B 177
24CC6SOFTWAREASN C:76BINDING SITE FOR MONO-SACCHARIDE NAG C2001 BOUND TO ASN C 76
25CC7SOFTWAREGLN C:168 , SER C:175 , ASN C:177 , HOH C:2172 , HOH C:2341BINDING SITE FOR MONO-SACCHARIDE NAG C1001 BOUND TO ASN C 177

(-) SS Bonds  (30, 30)

Asymmetric Unit
No.Residues
1A:8 -A:13
2A:37 -A:242
3A:49 -A:287
4A:51 -A:130
5A:59 -A:71
6A:82 -A:117
7A:176 -A:185
8A:225 -A:235
9A:349 -A:352
10A:368 -A:401
11B:8 -B:13
12B:37 -B:242
13B:49 -B:287
14B:51 -B:130
15B:59 -B:71
16B:82 -B:117
17B:176 -B:185
18B:225 -B:235
19B:349 -B:352
20B:368 -B:401
21C:8 -C:13
22C:37 -C:242
23C:49 -C:287
24C:51 -C:130
25C:59 -C:71
26C:82 -C:117
27C:176 -C:185
28C:225 -C:235
29C:349 -C:352
30C:368 -C:401

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Thr A:17 -Pro A:18
2Ser A:222 -Pro A:223
3Gly A:320 -Pro A:321
4Pro A:395 -Pro A:396
5Thr B:17 -Pro B:18
6Ser B:222 -Pro B:223
7Gly B:320 -Pro B:321
8Pro B:395 -Pro B:396
9Thr C:17 -Pro C:18
10Ser C:222 -Pro C:223
11Gly C:320 -Pro C:321
12Pro C:395 -Pro C:396

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 3)

Asymmetric Unit (1, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_RUBVM_005 *R609GPOLS_RUBVM  ---  ---A/B/CR27G
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_RUBVM_005 *R609GPOLS_RUBVM  ---  ---A/B/CR27G
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ADG)

(-) Exons   (0, 0)

(no "Exon" information available for 4ADG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:432
 aligned with POLS_RUBVM | P08563 from UniProtKB/Swiss-Prot  Length:1063

    Alignment length:435
                                   592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012     
          POLS_RUBVM    583 EEAFTYLCTAPGCATQTPVPVRLAGVRFESKIVDGGCFAPWDLEATGACICEIPTDVSCEGLGAWVPTAPCARIWNGTQRACTFWAVNAYSSGGYAQLASYFNPGGSYYKQYHPTACEVEPAFGHSDAACWGFPTDTVMSVFALASYVQHPHKTVRVKFHTETRTVWQLSVAGVSCNVTTEHPFCNTPHGQLEVQVPPDPGDLVEYIMNYTGNQQSRWGLGSPNCHGPDWASPVCQRHSPDCSRLVGATPERPRLRLVDADDPLLRTAPGPGEVWVTPVIGSQARKCGLHIRAGPYGHATVEMPEWIHAHTTSDPWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGGGNCHLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRASARVIDPAAQSFTGVVYGTHTTAVSET 1017
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eee.....eeeeeeeeeeeeeeeeeee...eeeeeeee................hhhhhhhhhh.eeeeeeeeeee..........hhhh...hhhhhhhh....eeee.................eeeeeeeee....hhheeeeeeeeeeeeeeeee..eeeee.....eeee..eeeeee.......eeeeee.---..eeeeee...........hhhhheee..............eeee....hhhhhh.....eeeeeee........eeeeee..hhheeehhhhhhhhhh..........eeeeee..............eeeeeeee......eeeeeee.....eeeee..eeeeee..eeeeeee........eee....eee.eeeeehhhhhhh..eee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4adg A    1 EEAFTYLCTAPGCATQTPVPVRLAGVRFESKIVDGGCFAPWDLEATGACICEIPTDVSCEGLGAWVPTAPCARIWNGTQRACTFWAVNAYSSGGYAQLASYFNPGGSYYKQYHPTACEVEPAFGHSDAACWGFPTDTVMSVFALASYVQHPHKTVRVKFHTETRTVWQLSVAGVSCNVTTEHPFCNTPHGQLEVQVPPDPGDLVEYIMN---NQQSRWGLGSPNCHGPDWASPVCQRHSPDCSRLVGATPERPRLRLVDADDPLLRTAPGPGEVWVTPVIGSQARKCGLHIRAGPYGHATVEMPEWIHAHTTSDPWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGGGNCHLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRASARVIDPAAQSFTGVVYGTHTTAVSET  435
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        |-  |    220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430     
                                                                                                                                                                                                                                          209 213                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:433
 aligned with POLS_RUBVM | P08563 from UniProtKB/Swiss-Prot  Length:1063

    Alignment length:435
                                   592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012     
          POLS_RUBVM    583 EEAFTYLCTAPGCATQTPVPVRLAGVRFESKIVDGGCFAPWDLEATGACICEIPTDVSCEGLGAWVPTAPCARIWNGTQRACTFWAVNAYSSGGYAQLASYFNPGGSYYKQYHPTACEVEPAFGHSDAACWGFPTDTVMSVFALASYVQHPHKTVRVKFHTETRTVWQLSVAGVSCNVTTEHPFCNTPHGQLEVQVPPDPGDLVEYIMNYTGNQQSRWGLGSPNCHGPDWASPVCQRHSPDCSRLVGATPERPRLRLVDADDPLLRTAPGPGEVWVTPVIGSQARKCGLHIRAGPYGHATVEMPEWIHAHTTSDPWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGGGNCHLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRASARVIDPAAQSFTGVVYGTHTTAVSET 1017
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eee.....eeeeeeeeeeeeeeeeeee...eeeeeeee................hhhhhhhhhh.eeeeeeeeeee..........hhhh...hhhhhhhh....eeee.................eeeeeeeee....hhheeeeeeeeeeeeeeeee..eeeee.....ee....eeeeee.......eeeeee..--..eeeeee...........hhhhheee..............eeee....hhhhhh.....eeeeeeee......eeeeeee.hhhheeehhhhhhhhhh..........eeeee...............eeeeeeee......eeeeeee.....eeeee..eeeeee..eeeeeee........eee....eee.eeeeehhhhhhh..eee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4adg B    1 EEAFTYLCTAPGCATQTPVPVRLAGVRFESKIVDGGCFAPWDLEATGACICEIPTDVSCEGLGAWVPTAPCARIWNGTQRACTFWAVNAYSSGGYAQLASYFNPGGSYYKQYHPTACEVEPAFGHSDAACWGFPTDTVMSVFALASYVQHPHKTVRVKFHTETRTVWQLSVAGVSCNVTTEHPFCNTPHGQLEVQVPPDPGDLVEYIMNY--NQQSRWGLGSPNCHGPDWASPVCQRHSPDCSRLVGATPERPRLRLVDADDPLLRTAPGPGEVWVTPVIGSQARKCGLHIRAGPYGHATVEMPEWIHAHTTSDPWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGGGNCHLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRASARVIDPAAQSFTGVVYGTHTTAVSET  435
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  |    220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430     
                                                                                                                                                                                                                                           210  |                                                                                                                                                                                                                              
                                                                                                                                                                                                                                              213                                                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:433
 aligned with POLS_RUBVM | P08563 from UniProtKB/Swiss-Prot  Length:1063

    Alignment length:435
                                   592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012     
          POLS_RUBVM    583 EEAFTYLCTAPGCATQTPVPVRLAGVRFESKIVDGGCFAPWDLEATGACICEIPTDVSCEGLGAWVPTAPCARIWNGTQRACTFWAVNAYSSGGYAQLASYFNPGGSYYKQYHPTACEVEPAFGHSDAACWGFPTDTVMSVFALASYVQHPHKTVRVKFHTETRTVWQLSVAGVSCNVTTEHPFCNTPHGQLEVQVPPDPGDLVEYIMNYTGNQQSRWGLGSPNCHGPDWASPVCQRHSPDCSRLVGATPERPRLRLVDADDPLLRTAPGPGEVWVTPVIGSQARKCGLHIRAGPYGHATVEMPEWIHAHTTSDPWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGGGNCHLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRASARVIDPAAQSFTGVVYGTHTTAVSET 1017
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eee.....eeeeeeeeeeeeeeeeeee...eeeeeeee................hhhhhhhhhh.eeeeeeeeeee..........hhhh...hhhhhhhh....eeee.................eeeeeeeee....hhheeeeeeeeeeeeeeeee..eeeee.....eeee..eeeeee.......eeeeee..--..eeeeee...........hhhhheee..............eeee....hhhhhh.....eeeeeeee......eeeeeee.hhh.eeehhhhhhhhhh..........eeeeee..............eeeeeeee......eeeeeee.....eeeee..eeeeee..eeeeeee........eee....eee.eeeeehhhhhhh..eee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4adg C    1 EEAFTYLCTAPGCATQTPVPVRLAGVRFESKIVDGGCFAPWDLEATGACICEIPTDVSCEGLGAWVPTAPCARIWNGTQRACTFWAVNAYSSGGYAQLASYFNPGGSYYKQYHPTACEVEPAFGHSDAACWGFPTDTVMSVFALASYVQHPHKTVRVKFHTETRTVWQLSVAGVSCNVTTEHPFCNTPHGQLEVQVPPDPGDLVEYIMNY--NQQSRWGLGSPNCHGPDWASPVCQRHSPDCSRLVGATPERPRLRLVDADDPLLRTAPGPGEVWVTPVIGSQARKCGLHIRAGPYGHATVEMPEWIHAHTTSDPWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGGGNCHLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRASARVIDPAAQSFTGVVYGTHTTAVSET  435
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  |    220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430     
                                                                                                                                                                                                                                           210  |                                                                                                                                                                                                                              
                                                                                                                                                                                                                                              213
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ADG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ADG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ADG)

(-) Gene Ontology  (22, 22)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (POLS_RUBVM | P08563)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039619    T=4 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres.
    GO:0044177    host cell Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
    GO:0044178    host cell Golgi membrane    The lipid bilayer surrounding any of the compartments of the host cell Golgi apparatus.
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0033650    host cell mitochondrion    A semiautonomous, self replicating organelle as found in host cells that occurs in varying numbers, shapes, and sizes in the cell cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019013    viral nucleocapsid    The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

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        POLS_RUBVM | P08563: 4adi 4adj 4b3v 4har 4hbe 4hbo 5khc

(-) Related Entries Specified in the PDB File

4adi CRYSTAL STRUCTURE OF THE RUBELLA VIRUS ENVELOPE GLYCOPROTEIN E1 IN POST-FUSION FORM (CRYSTAL FORM I)
4adj CRYSTAL STRUCTURE OF THE RUBELLA VIRUS GLYCOPROTEIN E1 IN ITS POST-FUSION FORM CRYSTALLIZED IN PRESENCE OF 1MM OF CALCIUM ACETATE
4b3v CRYSTAL STRUCTURE OF THE RUBELLA VIRUS GLYCOPROTEIN E1 IN ITS POST-FUSION FORM CRYSTALLIZED IN PRESENCE OF 20MM OF CALCIUM ACETATE