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4ADG
Biol. Unit 1
Info
Asym.Unit (441 KB)
Biol.Unit 1 (429 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RUBELLA VIRUS ENVELOPE GLYCOPROTEIN E1 IN POST-FUSION FORM (CRYSTAL FORM II)
Authors
:
R. M. Dubois, M. C. Vaney, M. A. Tortorici, R. Al Kurdi, G. Barba-Spaeth
Date
:
26 Dec 11 (Deposition) - 09 Jan 13 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.18
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Viral Protein, Membrane Fusion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Dubois, M. C. Vaney, M. A. Tortorici, R. A. Kurdi, G. Barba-Spaeth T. Krey, F. A. Rey
Functional And Evolutionary Insight From The Crystal Structure Of Rubella Virus Protein E1.
Nature V. 493 552 2013
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 21)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: CHLORIDE ION (CLa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: N-ACETYL-D-GALACTOSAMINE (NGAa)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GOL
12
Ligand/Ion
GLYCEROL
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NGA
1
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
7
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY C:93 , GLY C:94 , TYR C:95 , ALA C:96 , GLN C:97 , LEU C:98 , TYR C:101 , ARG C:342 , GOL C:1438
BINDING SITE FOR RESIDUE GOL C1436
02
AC2
SOFTWARE
PRO B:355 , ALA B:356 , LEU B:357 , HOH B:2386 , HIS C:308 , THR C:311 , THR C:312
BINDING SITE FOR RESIDUE GOL B1436
03
AC3
SOFTWARE
ASN B:103 , PRO B:104 , TYR B:108 , PRO C:121 , PHE C:123
BINDING SITE FOR RESIDUE GOL C1437
04
AC4
SOFTWARE
TYR C:95 , TYR C:101 , TYR C:112 , ARG C:342 , ALA C:362 , PRO C:363 , GOL C:1436
BINDING SITE FOR RESIDUE GOL C1438
05
AC5
SOFTWARE
ARG A:217 , HIS A:308 , THR A:311 , THR A:312 , THR C:347 , PRO C:355 , ALA C:356 , LEU C:357 , HOH C:2342
BINDING SITE FOR RESIDUE GOL C1439
06
AC6
SOFTWARE
GLY B:77 , THR B:78 , GLN B:79 , ARG B:252 , HOH B:2085 , ALA C:268 , HIS C:298
BINDING SITE FOR RESIDUE GOL B1437
07
AC7
SOFTWARE
SER B:100 , TYR B:101 , TYR B:108
BINDING SITE FOR RESIDUE GOL B1438
08
AC8
SOFTWARE
SER C:100 , TYR C:101 , TYR C:108
BINDING SITE FOR RESIDUE GOL C1440
09
AC9
SOFTWARE
SER A:100 , TYR A:101 , TYR A:108
BINDING SITE FOR RESIDUE GOL A1436
10
BC1
SOFTWARE
LYS B:110 , HOH B:2119 , HOH B:2123 , ARG C:256 , LEU C:257 , ASP C:262 , HOH C:2119 , HOH C:2242 , HOH C:2343
BINDING SITE FOR RESIDUE GOL C1441
11
BC2
SOFTWARE
HOH B:2384 , TRP C:65 , ARG C:285 , LYS C:286
BINDING SITE FOR RESIDUE GOL C1442
12
BC3
SOFTWARE
SER B:433 , THR B:435 , GLY C:63 , TRP C:65 , VAL C:66 , PRO C:67
BINDING SITE FOR RESIDUE GOL C1443
13
BC4
SOFTWARE
ASN A:88 , ALA A:89 , ASP A:136 , THR A:137 , ACT A:1438 , HOH A:2118
BINDING SITE FOR RESIDUE CA A1437
14
BC5
SOFTWARE
ASN B:88 , ALA B:89 , ASP B:136 , THR B:137 , ACT B:1440 , HOH B:2097
BINDING SITE FOR RESIDUE CA B1439
15
BC6
SOFTWARE
ASN C:88 , ALA C:89 , ASP C:136 , THR C:137 , ACT C:1446 , HOH C:2089
BINDING SITE FOR RESIDUE CA C1444
16
BC7
SOFTWARE
SER A:313 , ASP A:314 , HOH A:2328 , HOH A:2330 , HOH A:2334 , THR C:387 , ALA C:388
BINDING SITE FOR RESIDUE PEG C1445
17
BC8
SOFTWARE
ASN A:88 , ASP A:136 , THR A:137 , CA A:1437 , HOH A:2165
BINDING SITE FOR RESIDUE ACT A1438
18
BC9
SOFTWARE
ASN B:88 , THR B:135 , ASP B:136 , THR B:137 , CA B:1439 , HOH B:2097
BINDING SITE FOR RESIDUE ACT B1440
19
CC1
SOFTWARE
ASN C:88 , ASP C:136 , THR C:137 , CA C:1444 , HOH C:2134
BINDING SITE FOR RESIDUE ACT C1446
20
CC2
SOFTWARE
GLU A:193 , LYS A:325 , GLU B:193 , LYS B:325 , LYS B:327 , GLU C:193 , LYS C:325 , LYS C:327
BINDING SITE FOR RESIDUE CL A1439
21
CC3
SOFTWARE
ARG A:27 , GLN A:168 , SER A:175 , ASN A:177 , HOH A:2421
BINDING SITE FOR MONO-SACCHARIDE NAG A1001 BOUND TO ASN A 177
22
CC4
SOFTWARE
THR A:430 , ALA A:431 , VAL A:432 , THR B:46
BINDING SITE FOR MONO-SACCHARIDE NGA A4001 BOUND TO THR A 430
23
CC5
SOFTWARE
ARG B:27 , GLN B:168 , SER B:175 , ASN B:177 , HOH B:2385
BINDING SITE FOR MONO-SACCHARIDE NAG B1001 BOUND TO ASN B 177
24
CC6
SOFTWARE
ASN C:76
BINDING SITE FOR MONO-SACCHARIDE NAG C2001 BOUND TO ASN C 76
25
CC7
SOFTWARE
GLN C:168 , SER C:175 , ASN C:177 , HOH C:2172 , HOH C:2341
BINDING SITE FOR MONO-SACCHARIDE NAG C1001 BOUND TO ASN C 177
[
close Site info
]
SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLS_RUBVM_005 (R27G, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLS_RUBVM_005
*
R
609
G
POLS_RUBVM
---
---
A/B/C
R
27
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
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)
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Nucleic
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (441 KB)
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