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(-) Description

Title :  STRUCTURE OF RUBELLA VIRUS E1 GLYCOPROTEIN ECTODOMAIN FITTED INTO SUB-TOMOGRAM AVERAGED SURFACE SPIKE DENSITY OF RUBELLA VIRUS
 
Authors :  V. Mangala Prasad, T. Klose, M. G. Rossmann
Date :  14 Jun 16  (Deposition) - 10 May 17  (Release) - 14 Jun 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  11.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Rubella Virus, Surface Glycoprotein Spike, E1-E2 Heterodimer, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Mangala Prasad, T. Klose, M. G. Rossmann
Assembly, Maturation And Three-Dimensional Helical Structur Of The Teratogenic Rubella Virus.
Plos Pathog. V. 13 06377 2017
PubMed-ID: 28575072  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006377

(-) Compounds

Molecule 1 - E1 GLYCOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: CERCOPITHECUS AETHIOPS
    Expression System Common: AFRICAN GREEN MONKEY
    Expression System Taxid: 9534
    Fragment: ECTODOMAIN (UNP RESIDUES 583-1018)
    Organism Common: RUBV
    Organism Scientific: RUBELLA VIRUS
    Organism Taxid: 11041
    Synonym: P110

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5KHC)

(-) Sites  (0, 0)

(no "Site" information available for 5KHC)

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:8 -A:13
2A:37 -A:242
3A:49 -A:287
4A:51 -A:130
5A:59 -A:71
6A:82 -A:117
7A:176 -A:185
8A:225 -A:235
9A:349 -A:352
10A:368 -A:401

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Thr A:17 -Pro A:18
2Ser A:222 -Pro A:223
3Gly A:320 -Pro A:321
4Pro A:395 -Pro A:396

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KHC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KHC)

(-) Exons   (0, 0)

(no "Exon" information available for 5KHC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:418
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......ee.....eeeeeeeeeeeeeeeeeee...eeeeeeee................hhhhhhhhhh.eeeeeeeeeee.........hhhhh...hhhhhhhh....eeee.................eeeeeeeee..hhhhheeeeeeeeeeeeeeeee..eeeee.....eeee..eeeeee.......eeeeee...eeeeee...........hhhhheee..............eeee....hhhhhh.....eeeeeee........eeeeee.hhhhh..hhhhhhhhhh..........eeeeee..............eeeeeeee......eeeeeee.....eeeee..eeeeee..eeeeeee........eee....eee.eeeeehhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5khc A   1 EEAFTYLCTAPGCATQTPVPVRLAGVRFESKIVDGGCFAPWDLEATGACICEIPTDVSCEGLGAWVPTAPCARIWNGTQRACTFWAVNAYSSGGYAQLASYFNPGGSYYKQYHPTACEVEPAFGHSDAACWGFPTDTVMSVFALASYVQHPHKTVRVKFHTETRTVWQLSVAGVSCNVTTEHPFCNTPHGQLEVQVPPDPGDLVEYIMNNQQSRWGLGSPNCHGPDWASPVCQRHSPDCSRLVGATPERPRLRLVDADDPLLRTAPGPGEVWVTPVIGSQARKCGLHIRAGPYGHATVEMPEWIHAHTTSDPWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGGGNCHLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRASARVIDPAAQSFT 421
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413        
                                                                                                                                                                                                                                          209|                                                                                                                                                                                                                
                                                                                                                                                                                                                                           213
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KHC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KHC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KHC)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:320 - Pro A:321   [ RasMol ]  
    Pro A:395 - Pro A:396   [ RasMol ]  
    Ser A:222 - Pro A:223   [ RasMol ]  
    Thr A:17 - Pro A:18   [ RasMol ]  
 

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  5khc
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  POLS_RUBVM | P08563
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLS_RUBVM | P08563: 4adg 4adi 4adj 4b3v 4har 4hbe 4hbo

(-) Related Entries Specified in the PDB File

5khe 5khf