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(-) Description

Title :  THE STRUCTURE OF THE S37P MS2 VIRAL CAPSID ASSEMBLY.
 
Authors :  M. A. Asensio, B. Sankaran, P. H. Zwart, D. Tullman-Ercek
Date :  06 May 15  (Deposition) - 07 Sep 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (12x)
Keywords :  Capsid, Virus Like Particle, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Asensio, N. M. Morella, C. M. Jakobson, E. C. Hartman, J. E. Glasgow, B. Sankaran, P. H. Zwart, D. Tullman-Ercek
A Selection For Assembly Reveals That A Single Amino Acid Mutant Of The Bacteriophage Ms2 Coat Protein Forms A Smalle Virus-Like Particle.
Nano Lett. V. 16 5944 2016
PubMed-ID: 27549001  |  Reference-DOI: 10.1021/ACS.NANOLETT.6B02948

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI K-12
    Expression System Taxid: 83333
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE MS2
    Organism Taxid: 329852

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (12x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 48)
No.NameCountTypeFull Name
1PO448Ligand/IonPHOSPHATE ION

(-) Sites  (0, 0)

(no "Site" information available for 4ZOR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZOR)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:36 -Pro A:37
2Gly A:73 -Gly A:74
3Asn B:36 -Pro B:37
4Asn C:36 -Pro C:37
5Asn D:36 -Pro D:37
6Asn E:36 -Pro E:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZOR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZOR)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZOR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.......eeeeeeeee..eeeee...hhhhh.eeeeeeee....eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zor A   2 SNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNPRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    11        21        31        41        51        61        71        81        91       101       111       121        


Chain B from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......eeeeeeeee..eeeee...hhhhh.eeeeeeee....eeeeeeeeeee...........eeeeeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zor B   1 ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNPRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    10        20        30        40        50        60        76        86        96       106       116       126   
                                                                                               69|                                                     
                                                                                                76                                                     


Chain C from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......eeeeeeeee..eeeee...hhhhh.eeeeeeeeee..eeeeeeeeeeeeeee...eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zor C   1 ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNPRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    10        20        30        40        50        60        70|       85        95       105       115       125    
                                                                                                70|                                                     
                                                                                                 76                                                     


Chain D from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee.......eeeeeeeee..eeeee...hhhhh.eeeeeeee....eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zor D   1 ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNPRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    10        20        30        40        50        60        70||      83        93       103       113       123      
                                                                                                 71|                                                      
                                                                                                  75                                                      


Chain E from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......eeeeeeeee..eeeee...hhhhh.eeeeeeeeee..eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zor E   1 ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNPRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZOR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZOR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZOR)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:36 - Pro A:37   [ RasMol ]  
    Asn B:36 - Pro B:37   [ RasMol ]  
    Asn C:36 - Pro C:37   [ RasMol ]  
    Asn D:36 - Pro D:37   [ RasMol ]  
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  4zor
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  CAPSD_BPMS2 | P03612
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BPMS2 | P03612: 1aq3 1aq4 1bms 1msc 1mst 1mva 1mvb 1u1y 1zdh 1zdi 1zdj 1zdk 1zse 2b2d 2b2e 2b2g 2bny 2bq5 2bs0 2bs1 2bu1 2c4q 2c4y 2c4z 2c50 2c51 2iz8 2iz9 2izm 2izn 2ms2 2vtu 2wbh 4bp7 5msf 5tc1 6msf 7msf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZOR)