5MSF | PR0001 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   MS2 PROTEIN CAPSID/RNA COMPLEX

Authors :   S. Rowsell, N. J. Stonehouse, M. A. Convery, C. J. Adams, A. D. Ellington, I. Hirao, D. S. Peabody, P. G. Stockley, S. E. V. Phillips

Date :   15 May 98 (Deposition) - 11 Nov 98 (Release) - 24 Mar 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,R,S
Biol. Unit 1: A,B,C,R,S  (60x)

Keywords :   Capsid Protein Ms2/Rna Aptamer Complex, Rna-Protein Complex, Rna Stem Loop, Bacteriophage Ms2, Icosahedral Virus, Virus/Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Rowsell, N. J. Stonehouse, M. A. Convery, C. J. Adams, A. D. Ellington, I. Hirao, D. S. Peabody, P. G. Stockley, S. E. Phillips
Crystal Structures Of A Series Of Rna Aptamers Complexed To The Same Protein Target.
Nat. Struct. Biol. V. 5 970 1998
PubMed-ID: 9808042 | Reference-DOI: 10.1038/2946
(for further references see the PDB file header)

Molecule 1 - MS2 PROTEIN CAPSID
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	TG1
	Expression System Taxid	:	562
	Expression System Vector	:	PTACACP'
	Expression System Vector Type	:	PTAC
	Gene	:	COAT PROTEIN
	Organism Scientific	:	ENTEROBACTERIO PHAGE MS2
	Organism Taxid	:	12022

*Molecule 2 - 5'- R(CPCPGPGPAPGPGPAPUPCPAPCPCPAPCPGPGPG)- 3'*
	Chains	:	R, S
	Engineered	:	YES
	Other Details	:	FAMILY 5 CONSENSUS SEQUENCE FROM IN VITRO SELECTION
	Synonym	:	F5, 18-NT RNA APTAMER
	Synthetic	:	YES

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	R	S
Biological Unit 1 (60x)	:	A	B	C	R	S

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 5MSF)

(no "Site" information available for 5MSF)

(no "SS Bond" information available for 5MSF)

Asymmetric Unit

No.	Residues
1	Leu B:77	-	Pro B:78

(no "SAP(SNP)/Variant" information available for 5MSF)

(no "PROSITE Motif" information available for 5MSF)

(no "Exon" information available for 5MSF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains d5msfa_ A: MS2 virus coat protein                                                                                                 SCOP domains
               CATH domains 5msfA00 A:1-129 MS2 Viral Coat Protein                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......eeeeeee.hhh.eeeee........eeeeeee.....eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5msf A   1 ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains d5msfb_ B: MS2 virus coat protein                                                                                                 SCOP domains
               CATH domains 5msfB00 B:1-129 MS2 Viral Coat Protein                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......eeeeeee.hhh.eeee.........eeeeeee.....eeeeeeeeeee.............hhh.eeeeeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5msf B   1 ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain C from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains d5msfc_ C: MS2 virus coat protein                                                                                                 SCOP domains
               CATH domains 5msfC00 C:1-129 MS2 Viral Coat Protein                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......eeeeeeeee..eeeeee...hhh..eeeeeeee....eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5msf C   1 ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY 129
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain R from PDB  Type:RNA  Length:18
                                                  
                 5msf R   1 CCGGAGGAUCACCACGGG  18
                                    10

Chain S from PDB  Type:RNA  Length:16
                                                
                 5msf S   2 CGGAGGAUCACCACGG  17
                                    11

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: RNA bacteriophage capsid protein (40)

Superfamily: RNA bacteriophage capsid protein (40)

Family: RNA bacteriophage capsid protein (40)

Protein domain: MS2 virus coat protein (28)

Bacteriophage MS2 [TaxId: 12022] (28)

1a	d5msfa_	A:
1b	d5msfb_	B:
1c	d5msfc_	C:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: MS2 Viral Coat Protein (42)

Homologous Superfamily: MS2 Viral Coat Protein (42)

Enterobacterio phage ms2. Organism_taxid: 12022. (4)

1a	5msfA00	A:1-129
1b	5msfB00	B:1-129
1c	5msfC00	C:1-129

(no "Pfam Domain" information available for 5MSF)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Leu B:77 - Pro B:78	[ RasMol ]

Biological Unit
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