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(-) Description

Title :  STRUCTURE OF CDC123 FROM SCHIZOSACCHAROMYCES POMBE
 
Authors :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, W. Seufert, Y. Mechulam, E. S
Date :  23 Apr 15  (Deposition) - 14 Oct 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Atp-Grap Fold, Eif2, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, Y. Mechulam, W. Seufert, E. Schmitt
Cdc123, A Cell Cycle Regulator Needed For Eif2 Assembly, Is An Atp-Grasp Protein With Unique Features.
Structure V. 23 1596 2015
PubMed-ID: 26211610  |  Reference-DOI: 10.1016/J.STR.2015.06.014

(-) Compounds

Molecule 1 - CELL DIVISION CYCLE PROTEIN 123
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Expression System Vector Type: PLASMID
    Gene: CDC123, SPAP27G11.03
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
    Synonym: CDC123

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ADP-1Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:94 , THR A:101 , LYS A:103 , LEU A:114 , LYS A:164 , GLU A:165 , TRP A:166 , PHE A:167 , MET A:169 , GLU A:174 , ARG A:176 , ARG A:190 , ASP A:227 , ILE A:238 , ASP A:239 , ASN A:241 , HOH A:409 , HOH A:424 , HOH A:444 , HOH A:455 , HOH A:501binding site for residue ADP A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZGP)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:33 -Pro A:34
2Lys B:33 -Pro B:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZGP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZGP)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZGP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeee.....hhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh..................eeeee....hhh.eeeeeee..eeeeeee......hhhhhhhhhhhhhhhhhhhh........eeeeeeee..eeeeeeeee..........hhhhhhhh.......eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgp A   2 TLILTKNQVLHCQFSSWYSLFRKLTPKAKVIKPIPATVLKYLHEDSIYVYYPEREAIQLIEKAIKELGGAVVPKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDNSVPKDFSFELVLKEWFPMHASTEFRCFVKSKRLIAFCQRDDNYYEFLKENIDCYEKLISDLLKKLDTFPDPDFVFDVYIHKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
                                    11        21        31        41        72        82        92       102       112       122       132       142     ||155       165       175       185       195       205       215       225       235       245       255       265         
                                                                           50|                                                                         148|                                                                                                                          
                                                                            72                                                                          152                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhh.......hhhhhhhhhhhhhhh...eeee.....hhhhh...........hhhhhhhhhhhhhhhhhhhhhh.................eeeee....hhh.eeeeeee..eeeeeee......hhhhhhhhhhhhhhhhhhhh........eeeeeeee..eeeeeeeee..........hhhhhhhh.......eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgp B   2 TLILTKNQVLHCQFSSWYSLFRKLTPKAKVIKPIPATVLKYLHEDSIYYYPEREAIQLIEKAIKELGGAVVPKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDSVPKDFSFELVLKEWFPMHASTEFRCFVKSKRLIAFCQRDDNYYEFLKENIDCYEKLISDLLKKLDTFPDPDFVFDVYIHKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
                                    11        21        31        41       |73        83        93       103       113       123       133       143   ||  157       167       177       187       197       207       217       227       237       247       257       267       
                                                                          49|                                                                        147|                                                                                                                          
                                                                           72                                                                         152
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZGP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZGP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZGP)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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  CD123_SCHPO | Q9P7N5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CD123_SCHPO | Q9P7N5: 4zgn 4zgo 4zgq

(-) Related Entries Specified in the PDB File

4zgo 4ZGO CONTAINS THE SAME PROTEIN WITHOUT NUCLEOTIDE