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(-) Description

Title :  STRUCTURE OF C-TERMINALLY TRUNCATED CDC123 FROM SCHIZOSACCHAROMYCES POMBE
 
Authors :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, W. Seufert, Y. Mechulam, E. S
Date :  23 Apr 15  (Deposition) - 30 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Atp-Grap Fold, Cell Cycle, Eif2 Assembly (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, Y. Mechulam, W. Seufert, E. Schmitt
Cdc123, A Cell Cycle Regulator Needed For Eif2 Assembly, Is An Atp-Grasp Protein With Unique Features.
Structure V. 23 1596 2015
PubMed-ID: 26211610  |  Reference-DOI: 10.1016/J.STR.2015.06.014

(-) Compounds

Molecule 1 - CELL DIVISION CYCLE PROTEIN 123
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 21-389
    Gene: CDC123, SPAP27G11.03
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZGO)

(-) Sites  (0, 0)

(no "Site" information available for 4ZGO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZGO)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:33 -Pro A:34
2Lys B:33 -Pro B:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZGO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZGO)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZGO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeee.....hhhhhhhh........hhhhhhhhhhhhhhhhhhhhh......................eeeee....hhh.eeeeeee..eeeeeee.....hhhhh.hhhhhhhhhhhhhhh........eeeeeeee..eeeeeeeee..........hhhhhhhh.......eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zgo A   2 TLILTKNQVLHCQFSSWYSLFRKLTPKAKVIKPIPATVLKYLHEDSIYVYYPEREAIQLIEKAIKELGGAVVPKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDNADGSVPKDFSFELVLKEWFPMHASTEFRCFVKSKRLIAFCQRDDNYYEFLKENIDCYEKLISDLLKKLDTFPDPDFVFDVYIHKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
                                    11        21        31        41        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272  
                                                                           50|                                                                                                                                                                                                          
                                                                            72                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhh.........hhhhhhhhhhhhhhh...eeee.......hhhhh.........hhhhhhhhhhhhhhhhhhhhh.....................eeeee....hhh.eeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhh........eeeeeeee..eeeeeeeee..........hhhhhhh........eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgo B   2 TLILTKNQVLHCQFSSWYSLFRKLTPKAKVIKPIPATVLKYLHEDSIYYYPEREAIQLIEKAIKELGGAVVPKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDNAGSVPKDFSFELVLKEWFPMHASTEFRCFVKSKRLIAFCQRDDNYYEFLKENIDCYEKLISDLLKKLDTFPDPDFVFDVYIHKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
                                    11        21        31        41       |73        83        93       103       113       123       133       143     ||154       164       174       184       194       204       214       224       234       244       254       264       274
                                                                          49|                                                                          149|                                                                                                                           
                                                                           72                                                                           151
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZGO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZGO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZGO)

(-) Gene Ontology  (12, 12)

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    Lys A:33 - Pro A:34   [ RasMol ]  
    Lys B:33 - Pro B:34   [ RasMol ]  
 
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 Related Entries

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UniProtKB/Swiss-Prot
        CD123_SCHPO | Q9P7N5: 4zgn 4zgp 4zgq

(-) Related Entries Specified in the PDB File

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