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(-) Description

Title :  STRUCTURE CDC123 COMPLEXED WITH THE C-TERMINAL DOMAIN OF EIF2GAMMA
 
Authors :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, W. Seufert, Y. Mechulam, E. S
Date :  23 Apr 15  (Deposition) - 30 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Atp-Grasp Fold, Cell Cycle, Eif2 Assembly (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, Y. Mechulam, W. Seufert, E. Schmitt
Cdc123, A Cell Cycle Regulator Needed For Eif2 Assembly, Is An Atp-Grasp Protein With Unique Features.
Structure V. 23 1596 2015
PubMed-ID: 26211610  |  Reference-DOI: 10.1016/J.STR.2015.06.014

(-) Compounds

Molecule 1 - CELL DIVISION CYCLE PROTEIN 123
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CDC123, SPAP27G11.03
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
 
Molecule 2 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 410-527
    Gene: GCD11, TIF213, YER025W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Synonym: EIF-2-GAMMA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:96 , TRP A:99 , SER A:100 , THR A:101 , LYS A:103 , LEU A:114 , LYS A:164 , GLU A:165 , TRP A:166 , PHE A:167 , GLU A:174 , ARG A:176 , ARG A:190 , ILE A:238 , ASP A:239 , ASN A:241 , MG A:402 , HOH A:501binding site for residue ATP A 401
2AC2SOFTWARETRP A:99 , ASP A:239 , ASN A:241 , ATP A:401 , HOH A:501 , HOH A:505binding site for residue MG A 402

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:204 -B:492

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZGN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZGN)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZGN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhh...........hhhhhhhhhhhhhh....eeee.....hhhhh...........hhhhhhhhhhhhhhhhhhhhh...................eeeee....hhh.eeeeeee..eeeeeee......hhhhhhhhhhhhhhhhhhhh........eeeeeeee..eeeeeeeee..........hhhhhhhh.......eee.....hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgn A  -6 LVPRGSHMTLILTKNQVLHCQFSSWYSLFRKLTPKAKVIKPIPATVLKYLHEDSIYVEQAYYPEREAIQLIEKAIKELGGAVVPKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDNADPKDFSFELVLKEWFPMHASTEFRCFVKSKRLIAFCQRDDNYYEFLKENIDCYEKLISDLLKKLDTFPDPDFVFDVYIHKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPKASEGENLLEFAQKWQDLTN 315
                                     3        13        23        33        43        71        81        91       101       111       121       131       141       154       164       174       184       194       204       214       224       234       244       254       264       274|      306         
                                                                                     52|                                                                            150|                                                                                                                     274|                  
                                                                                      71                                                                             154                                                                                                                      297                  


Chain B from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee........................eeeeee..eeeeeeeeee...eeeeeeeeeeee....eeeeeee....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 4zgn B 423 LPNIYTDIEINYFLLRRLLGVKTDGQKQAKVRKLEPNEVLMVNIGSTATGARVVAVKADMARLQLTSPACTEINEKIALSRRIEKHWRLIGWATIKKGTTLEP 525
                                   432       442       452       462       472       482       492       502       512       522
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZGN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZGN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZGN)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CD123_SCHPO | Q9P7N5: 4zgo 4zgp 4zgq
        IF2G_YEAST | P32481: 3j81 3jap 3jaq 4zgq

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZGN)