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(-) Description

Title :  STRUCTURE OF CDC123 BOUND TO EIF2-GAMMADIII DOMAIN
 
Authors :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, W. Seufert, Y. Mechulam, E. S
Date :  23 Apr 15  (Deposition) - 14 Oct 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Atp-Grasp Fold, Cell Cycle, Eif2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Panvert, E. Dubiez, L. Arnold, J. Perez, Y. Mechulam, W. Seufert, E. Schmitt
Cdc123, A Cell Cycle Regulator Needed For Eif2 Assembly, Is An Atp-Grasp Protein With Unique Features.
Structure V. 23 1596 2015
PubMed-ID: 26211610  |  Reference-DOI: 10.1016/J.STR.2015.06.014

(-) Compounds

Molecule 1 - CELL DIVISION CYCLE PROTEIN 123
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CDC123, SPAP27G11.03
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
    Synonym: CDC123
 
Molecule 2 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 410-527
    Gene: GCD11, TIF213, YER025W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: EIF-2-GAMMA, EIF2GAMMAD3

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZGQ)

(-) Sites  (0, 0)

(no "Site" information available for 4ZGQ)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:204 -B:492

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZGQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZGQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZGQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh.hhhhh..eeee...hhhhhhhhhh..ee........hhhhhhhhhhhhhhh...eeee.....hhhhh...........hhhhhhhhhhhhhhhhhhhhh...................eeeee........eeeeeee..eeeeeee......hhhhhhhhhhhhhhhhhhhhhh......eeeeeee....eeeeeeee..........hhhhhhh........eee.....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgq A   2 TLILTKNQVLHCQFSSWYSLFRKLTPKAKVIKPIPATVLKYLHEDSIYVEQPAYYPEREAIQLIEKAIKELGGAVVPKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDNADPKDFSFELVLKEWFPMHASTEFRCFVKSKRLIAFCQRDDNYYEFLKENIDCYEKLISDLLKKLDTFPDPDFVFDVYIHKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPKASEGENLLEFAQKWQDLTN 315
                                    11        21        31        41        51||      78        88        98       108       118       128       138       148 ||    161       171       181       191       201       211       221       231       241       251       261       271  ||   303       313  
                                                                             52|                                                                             150|                                                                                                                     274|                  
                                                                              70                                                                              154                                                                                                                      297                  


Chain B from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.......................eeeeeee..eeeeeeeeee...eeeeeeeeeeee....eeeeeee....eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4zgq B 423 LPNIYTDIEINYFLLRRLLGVKTDGQKQAKVRKLEPNEVLMVNIGSTATGARVVAVKADMARLQLTSPACTEINEKIALSRRIEKHWRLIGWATIKKGTTLE 524
                                   432       442       452       462       472       482       492       502       512       522
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZGQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZGQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZGQ)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:33 - Pro A:34   [ RasMol ]  
 

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  4zgq
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CD123_SCHPO | Q9P7N5: 4zgn 4zgo 4zgp
        IF2G_YEAST | P32481: 3j81 3jap 3jaq 4zgn

(-) Related Entries Specified in the PDB File

4zgn