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(-) Description

Title :  CRYSTAL STRUCTURE OF A DJ-1 (PARK7) FROM HOMO SAPIENS AT 1.23 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Receptor Signaling Code Biology (Nhrs), Partnership For T-Ce Biology (Tcell)
Date :  22 Apr 15  (Deposition) - 20 May 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.23
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Parkinson Disease, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Partnership For Nuclear Receptor Signaling Code Biology, Nhrs, Partnership For T- Cell Biology, Tcell, Psi-Biology, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For Nuclear Receptor Signaling Code Biology (Nhrs), Partnership For T-Cell Biology (Tcell)
Crystal Structure Of A Dj-1 (Park7) From Homo Sapiens At 1. 23 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN DEGLYCASE DJ-1
    Chains: A
    EC Number: 3.1.2.-, 3.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PARK7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DJ-1,ONCOGENE DJ1,PARKINSON DISEASE PROTEIN 7

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric Unit (2, 15)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 30)
No.NameCountTypeFull Name
1EDO20Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:12 , GLN A:45 , LYS A:122 , GLU A:147 , LYS A:148 , ASP A:149 , HOH A:316binding site for residue EDO A 201
02AC2SOFTWAREASN A:76 , HOH A:382 , HOH A:497binding site for residue EDO A 202
03AC3SOFTWAREARG A:28 , HIS A:126 , PRO A:158 , PRO A:184 , HOH A:313 , HOH A:382binding site for residue EDO A 203
04AC4SOFTWAREPRO A:66 , TYR A:67 , GLU A:94 , GLN A:95 , HOH A:311 , HOH A:314binding site for residue EDO A 204
05AC5SOFTWAREGLN A:80 , ASN A:81 , GLU A:84 , LYS A:99binding site for residue EDO A 205
06AC6SOFTWAREGLN A:80 , GLU A:96 , LYS A:132 , HOH A:490binding site for residue EDO A 206
07AC7SOFTWARELYS A:175 , ALA A:178 , ALA A:179 , HOH A:312 , HOH A:335 , HOH A:479binding site for residue EDO A 207
08AC8SOFTWARELYS A:175 , GLU A:176 , ALA A:179binding site for residue EDO A 208
09AC9SOFTWARECYS A:53 , PRO A:54 , ASP A:55binding site for residue EDO A 209
10AD1SOFTWAREVAL A:33 , THR A:34 , HOH A:360 , HOH A:378binding site for residue EDO A 210

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZGG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:65 -Pro A:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZGG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZGG)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZGG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhhhhhhhhh..eeeeee......ee.....ee...eehhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhh......ee..hhhhhhhhh.....ee....eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgg A   0 GmASKRALVILAKGAEEmETVIPVDVmRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKmmNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKD 189
                             |       9       |19      | 29        39        49        59        69        79        89        99       109       119       129   ||  139       149       159       169       179       189
                             |              17-MSE   26-MSE                                                                                                    133-MSE                                                    
                             1-MSE                                                                                                                              134-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZGG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZGG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZGG)

(-) Gene Ontology  (136, 136)

Asymmetric Unit(hide GO term definitions)

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    Gly A:65 - Pro A:66   [ RasMol ]  
 
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  4zgg
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  PARK7_HUMAN | Q99497
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARK7_HUMAN | Q99497: 1j42 1p5f 1pdv 1pdw 1pe0 1q2u 1soa 1ucf 2or3 2r1t 2r1u 2r1v 2rk3 2rk4 2rk6 3b36 3b38 3b3a 3bwe 3cy6 3cyf 3cz9 3cza 3ezg 3f71 3sf8 4bte 4mnt 4mtc 4n0m 4n12 4ogf 4oq4 4p2g 4p34 4p35 4p36 4rkw 4rky 4s0z 5ip5 5sy6 5sy9 5sya

(-) Related Entries Specified in the PDB File

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