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(-) Description

Title :  HUMAN DJ-1 COMPLEXED WITH NA-K-TARTRATE
 
Authors :  S. Lee, S. -S. Cha, Y. J. An
Date :  09 Mar 16  (Deposition) - 15 Mar 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym./Biol. Unit :  A
Keywords :  Na-K-Tartrate, Parkinson'S Diseases, Dj-1, Oxidative Stress, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Lee, S. -S. Cha, Y. J. An
Human Dj-1 Complexed With Na-K-Tartrate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN DEGLYCASE DJ-1
    Chains: A
    EC Number: 3.1.2.-, 3.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PARK7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DJ-1,ONCOGENE DJ1,PARKINSON DISEASE PROTEIN 7

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2TLA1Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:48 , GLY A:75 , ASN A:76 , HOH A:306 , HOH A:324 , HOH A:331 , HOH A:356binding site for residue TLA A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IP5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:65 -Pro A:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IP5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IP5)

(-) Exons   (0, 0)

(no "Exon" information available for 5IP5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhh..eeeeee......ee.....ee...eehhhhhh.....eeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhh......ee..hhhhhhhhh.....ee....eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ip5 A   3 SKRALVILAKGAEEmETVIPVDVmRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKmmNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
                                    12    |   22   |    32        42        52        62        72        82        92       102       112       122       132||     142       152       162       172       182      
                                         17-MSE   26-MSE                                                                                                    133-MSE                                                   
                                                                                                                                                             134-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IP5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IP5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IP5)

(-) Gene Ontology  (136, 136)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARK7_HUMAN | Q99497: 1j42 1p5f 1pdv 1pdw 1pe0 1q2u 1soa 1ucf 2or3 2r1t 2r1u 2r1v 2rk3 2rk4 2rk6 3b36 3b38 3b3a 3bwe 3cy6 3cyf 3cz9 3cza 3ezg 3f71 3sf8 4bte 4mnt 4mtc 4n0m 4n12 4ogf 4oq4 4p2g 4p34 4p35 4p36 4rkw 4rky 4s0z 4zgg 5sy6 5sy9 5sya

(-) Related Entries Specified in the PDB File

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