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(-) Description

Title :  PHENOLIC ACID DERIVATIVE BOUND TO INFLUENZA STRAIN H1N1 POLYMERASE SUBUNIT PA ENDONUCLEASE
 
Authors :  S. Fudo, N. Yamamoto, M. Nukaga, T. Odagiri, M. Tashiro, S. Neya, T. Hosh
Date :  24 Mar 15  (Deposition) - 29 Apr 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Fudo, N. Yamamoto, M. Nukaga, T. Odagiri, M. Tashiro, S. Neya, T. Hoshino
Structural And Computational Study On Inhibitory Compounds For Endonuclease Activity Of Influenza Virus Polymerase
Bioorg. Med. Chem. V. 23 5466 2015
PubMed-ID: 26252962  |  Reference-DOI: 10.1016/J.BMC.2015.07.046

(-) Compounds

Molecule 1 - POLYMERASE ACIDIC PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET50B(+)
    Expression System Strain: ROSETTA (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ENDONUCLEASE, RESIDUES 1-50, 73-197
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/1934 H1N1)
    Organism Taxid: 211044
    Strain: A/PUERTO RICO/8/1934 H1N1
    Synonym: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
14KN3Ligand/Ion2-(4-FLUOROPHENOXY)-1-(2,3,4-TRIHYDROXYPHENYL)ETHANONE
2MN2Ligand/IonMANGANESE (II) ION
3SO41Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:24 , HIS A:41 , GLU A:80 , ARG A:84 , PHE A:105 , LEU A:106 , ASP A:108 , GLU A:119 , ILE A:120 , LYS A:134 , 4KN A:302 , MN A:304 , MN A:305 , HOH A:433binding site for residue 4KN A 301
2AC2SOFTWARETHR A:20 , GLU A:26 , LYS A:34 , ALA A:37 , ILE A:38 , HIS A:41 , GLY A:121 , VAL A:122 , TYR A:130 , 4KN A:301 , 4KN A:303binding site for residue 4KN A 302
3AC3SOFTWAREGLU A:31 , LYS A:34 , ALA A:37 , ARG A:124 , PHE A:150 , PHE A:191 , SER A:194 , GLU A:195 , 4KN A:302 , HOH A:407binding site for residue 4KN A 303
4AC4SOFTWAREHIS A:41 , ASP A:108 , GLU A:119 , ILE A:120 , 4KN A:301 , MN A:305binding site for residue MN A 304
5AC5SOFTWAREGLU A:80 , ASP A:108 , 4KN A:301 , MN A:304 , HOH A:433 , HOH A:455binding site for residue MN A 305
6AC6SOFTWAREARG A:124 , ARG A:179 , TRP A:188 , ARG A:192binding site for residue SO4 A 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YYL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YYL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YYL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YYL)

(-) Exons   (0, 0)

(no "Exon" information available for 4YYL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhhh.........eee....eeeeeeee..hhhhhhhhhhhhhh....eeeeee....eee.hhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yyl A  -4 GPLGSMEDFVRQCFNPMIVELAEKTMKEYGEDLKIETNKFAAICTHLEVCFMYSDASKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER 196
                                     5        15        25        35        45      ||75        85        95       105       115       125       135       145       155       165       175       185       195 
                                                                                   52|                                                                                                                           
                                                                                    73
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YYL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YYL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YYL)

(-) Gene Ontology  (24, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        PA_I34A1 | P03433: 2znl 4zhz 4zi0 4zqq 5fdd 5fdg 5i13 5jht 5jhv

(-) Related Entries Specified in the PDB File

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