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(-) Description

Title :  APO FORM OF INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION CRYSTALLIZED WITH POLYETHYLENE GLYCOL 8000
 
Authors :  S. Fudo, N. Yamamoto, M. Nukaga, T. Odagiri, M. Tashiro, T. Hoshino
Date :  21 Apr 16  (Deposition) - 11 May 16  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Fudo, Q. Fei, M. Nukaga, T. Hoshino
Influence Of Precipitants On Molecular Arrangements And Space Groups Of Protein Crystals
Cryst. Growth Des. V. 17 534 2017
PubMed: search  |  Reference-DOI: 10.1021/ACS.CGD.6B01385

(-) Compounds

Molecule 1 - POLYMERASE ACIDIC PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-50,73-197
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 211044
    Strain: A/PUERTO RICO/8/1934 H1N1
    Synonym: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:41 , ASP A:108 , GLU A:119 , ILE A:120 , HOH A:421binding site for residue MN A 301
2AC2SOFTWAREHIS A:41 , GLU A:80 , ASP A:108 , HOH A:406 , HOH A:420 , HOH A:421binding site for residue MN A 302
3AC3SOFTWAREHIS B:41 , ASP B:108 , GLU B:119 , ILE B:120 , HOH B:405binding site for residue MN B 301
4AC4SOFTWAREGLU B:80 , LEU B:106 , ASP B:108 , HOH B:412binding site for residue MN B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JHV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JHV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JHV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JHV)

(-) Exons   (0, 0)

(no "Exon" information available for 5JHV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhhh.........eee....eeeeeeee..hhhhhhhhhhhhh.....eeeeee....eee.hhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jhv A  -4 GPLGSMEDFVRQCFNPMIVELAEKTMKEYGEDLKIETNKFAAICTHLEVCFMYSDASKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER 196
                                     5        15        25        35        45      ||75        85        95       105       115       125       135       145       155       165       175       185       195 
                                                                                   52|                                                                                                                           
                                                                                    73                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhh.........eee....eeeeeeee..hhhhhhhhhhhhhh....eeeeee....eee.hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jhv B  -4 GPLGSMEDFVRQCFNPMIVELAEKTMKEYGEDLKIETNKFAAICTHLEVCFMYSDASKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER 196
                                     5        15        25        35        45      ||75        85        95       105       115       125       135       145       155       165       175       185       195 
                                                                                   52|                                                                                                                           
                                                                                    73
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JHV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JHV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JHV)

(-) Gene Ontology  (24, 24)

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  5jhv
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  PA_I34A1 | P03433
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PA_I34A1 | P03433: 2znl 4yyl 4zhz 4zi0 4zqq 5fdd 5fdg 5i13 5jht

(-) Related Entries Specified in the PDB File

4zqq THE SAME PROTEIN CRYSTALLIZED WITH DIFFERENT CONDITION.
5jht