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(-) Description

Title :  APO FORM OF INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION CRYSTALLIZED WITH POTASSIUM SODIUM TARTRATE
 
Authors :  S. Fudo, N. Yamamoto, M. Nukaga, T. Odagiri, M. Tashiro, T. Hoshino
Date :  21 Apr 16  (Deposition) - 11 May 16  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Fudo, Q. Fei, M. Nukaga, T. Hoshino
Influence Of Precipitants On Molecular Arrangements And Space Groups Of Protein Crystals
Cryst. Growth Des. V. 17 534 2017
PubMed: search  |  Reference-DOI: 10.1021/ACS.CGD.6B01385

(-) Compounds

Molecule 1 - POLYMERASE ACIDIC PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-50, 73-197
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 211044
    Strain: A/PUERTO RICO/8/1934 H1N1
    Synonym: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION
2TLA1Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:41 , ASP A:108 , GLU A:119 , ILE A:120 , TLA A:303binding site for residue MN A 301
2AC2SOFTWAREGLU A:80 , ASP A:108 , TLA A:303 , HOH A:423 , HOH A:454 , HOH A:482binding site for residue MN A 302
3AC3SOFTWAREHIS A:41 , GLU A:80 , ASP A:108 , GLU A:119 , ILE A:120 , TYR A:130 , LYS A:134 , MN A:301 , MN A:302 , HOH A:404 , HOH A:408 , HOH A:423 , HOH A:456 , HOH A:482binding site for residue TLA A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JHT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JHT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JHT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JHT)

(-) Exons   (0, 0)

(no "Exon" information available for 5JHT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhhh.........eee....eeeeeeee..hhhhhhhhhhhhhh....eeeeee....eee.hhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jht A  -4 GPLGSMEDFVRQCFNPMIVELAEKTMKEYGEDLKIETNKFAAICTHLEVCFMYSDASKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER 196
                                     5        15        25        35        45      ||75        85        95       105       115       125       135       145       155       165       175       185       195 
                                                                                   52|                                                                                                                           
                                                                                    73
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JHT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JHT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JHT)

(-) Gene Ontology  (24, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PA_I34A1 | P03433: 2znl 4yyl 4zhz 4zi0 4zqq 5fdd 5fdg 5i13 5jhv

(-) Related Entries Specified in the PDB File

4zqq THE SAME PROTEIN CRYSTALLIZED IN A DIFFERENT CONDITION
5jhv