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(-) Description

Title :  ATAXIN-3 CARBOXY-TERMINAL REGION - CRYSTAL C1 (TETRAGONAL)
 
Authors :  V. A. Zhemkov, M. Kim
Date :  16 Mar 15  (Deposition) - 09 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  B
Keywords :  Ataxin-3, Polyglutamine, Huntington'S Disease, Triplet Repeat Disorder, Ataxins, Ataxia, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. A. Zhemkov, A. A. Kulminskaya, I. B. Bezprozvanny, M. Kim
The 2. 2-Angstrom Resolution Crystal Structure Of The Carboxy-Terminal Region Of Ataxin-3
Febs Open Bio V. 6 168 2016
PubMed: search  |  Reference-DOI: 10.1002/2211-5463.12029

(-) Compounds

Molecule 1 - MALTOSE-BINDING PERIPLASMIC PROTEIN, ATAXIN-3 CHIMERA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Fragment: MBP RESIDUES 27-392 (UNP) + ATAXIN-3 C-TERMINAL REGION (UNP RESIDUES 278-324)
    Gene: MALE, Z5632, ECS5017, ATXN3, ATX3, MJD, MJD1, SCA3
    Organism Common: HUMAN, HUMAN
    Organism Scientific: ESCHERICHIA COLI, HOMO SAPIENS
    Organism Taxid: 562, 9606
    Synonym: MBP, MMBP, MALTODEXTRIN-BINDING PROTEIN,MACHADO-JOSEPH DISEASE PROTEIN 1, SPINOCEREBELLAR ATAXIA TYPE 3 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1MAL1Ligand/IonMALTOSE
2ZN4Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN B:12 , ASP B:14 , LYS B:15 , TRP B:62 , ALA B:63 , ASP B:65 , ARG B:66 , GLU B:111 , GLU B:153 , PRO B:154 , TYR B:155 , TRP B:340 , ARG B:344 , HOH B:616 , HOH B:619 , HOH B:656binding site for residue MAL B 501
2AC2SOFTWAREHIS B:39 , ASP B:164 , ZN B:504 , HOH B:663binding site for residue ZN B 502
3AC3SOFTWAREHIS B:203 , GLU B:278 , ZN B:505 , HOH B:607 , HOH B:688binding site for residue ZN B 503
4AC4SOFTWAREASP B:164 , ZN B:502binding site for residue ZN B 504
5AC5SOFTWAREGLU B:278 , ZN B:503 , HOH B:685 , HOH B:689binding site for residue ZN B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YS9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YS9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YS9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YS9)

(-) Exons   (0, 0)

(no "Exon" information available for 4YS9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhh....eeeee..hhhhhhhh........hhhhhh..hhhhhhhhee..ee..eeeeee..eeeee............hhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhhh..eeee............eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ys9 B   1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAASEELRKRREAYFEK 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380 |||
                                                                                                                                                                                                                                                                                                                                                                                                                       382||
                                                                                                                                                                                                                                                                                                                                                                                                                        429|
                                                                                                                                                                                                                                                                                                                                                                                                                         431
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YS9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YS9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YS9)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATX3_HUMAN | P54252: 1yzb 2aga 2dos 2jri 2klz 4wth
        MALE_ECO57 | P0AEY0: 1a7l 1anf 1dmb 1ez9 1ezo 1ezp 1fqa 1fqb 1fqc 1fqd 1hsj 1iud 1jvx 1jvy 1jw4 1jw5 1lax 1lls 1mdp 1mdq 1mg1 1mh3 1mh4 1mpb 1mpc 1mpd 1n3w 1n3x 1nl5 1nmu 1omp 1peb 1r6z 1svx 1t0k 1y4c 1ytv 1ziu 1zjl 1zkb 1zmg 2v93 3io4 3io6 3mbp 3osq 3osr 3vd8 4feb 4mbp 4my2 4wgi 4wrn 4wth 4wvg 4wvh 4wvi 4wvj 4xa2 4xai 4xaj 4xhs 5bmy 5c7r 5cl1 5dfm 5e24 5e7u 5edu 5fio 5ii4 5jj4 5jon 5jtq 5jtr 5k94 5ldf 5lof 5t03 5t05 5t0a 5ttd

(-) Related Entries Specified in the PDB File

4wth ATAXIN-3 CARBOXY-TERMINAL REGION - CRYSTAL P1