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(-) Description

Title :  TAILSPIKE PROTEIN MUTANT E372Q (DELTA D470/N471) OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
 
Authors :  U. Gohlke, N. K. Broeker, U. Heinemann, R. Seckler, S. Barbirz
Date :  19 Jan 15  (Deposition) - 27 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Helix, Protein-Carbohydrate Complex, Pectin Lyase Fold, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Gohlke, N. K. Broeker, S. Kunstmann, M. Santer, U. Heinemann, R. Lipowski, R. Seckler, S. Barbirz
Enthalpic Cost Of Water Removal From A Hydrophobic Glucose Binding Cavity On Hk620 Tailspike Protein.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL SPIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET11D
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: HEAD BINDING, RESIDUES 111-710
    Mutation: YES
    Organism Scientific: SALMONELLA PHAGE HK620
    Organism Taxid: 155148

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 13)

Asymmetric Unit (8, 13)
No.NameCountTypeFull Name
1FMT3Ligand/IonFORMIC ACID
2GLA1Ligand/IonALPHA D-GALACTOSE
3GLC2Ligand/IonALPHA-D-GLUCOSE
4NA3Ligand/IonSODIUM ION
5NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7RAM1Ligand/IonALPHA-L-RHAMNOSE
8TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (7, 30)
No.NameCountTypeFull Name
1FMT9Ligand/IonFORMIC ACID
2GLA3Ligand/IonALPHA D-GALACTOSE
3GLC6Ligand/IonALPHA-D-GLUCOSE
4NA-1Ligand/IonSODIUM ION
5NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7RAM3Ligand/IonALPHA-L-RHAMNOSE
8TRS3Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:568 , ASN A:569 , TYR A:597 , ASP A:670 , ILE A:693 , ARG A:697 , HOH A:1191 , HOH A:1205 , HOH A:1331 , HOH A:1336 , HOH A:1372binding site for residue TRS A 1007
2AC2SOFTWARETYR A:597 , ASN A:625 , LEU A:669 , ASP A:670 , HOH A:1112 , HOH A:1267binding site for residue FMT A 1008
3AC3SOFTWAREARG A:140 , ASP A:144 , HOH A:1123 , HOH A:1146binding site for residue FMT A 1009
4AC4SOFTWARETYR A:639 , ASN A:640 , HOH A:1109binding site for residue FMT A 1010
5AC5SOFTWAREALA A:565 , SER A:592 , GLN A:594 , HOH A:1596 , HOH A:1619 , HOH A:1621binding site for residue NA A 1011
6AC6SOFTWAREVAL A:483 , THR A:512 , ASN A:517 , HOH A:1422 , HOH A:1583 , HOH A:1636binding site for residue NA A 1012
7AC7SOFTWAREGLY A:211 , RAM A:1001 , HOH A:1404 , HOH A:1513 , HOH A:1640binding site for residue NA A 1013
8AC8SOFTWAREGLY A:211 , HIS A:212 , GLN A:242 , LEU A:282 , THR A:307 , TRP A:308 , THR A:311 , TRP A:314 , ASN A:315 , ASP A:339 , SER A:341 , TYR A:344 , ASN A:346 , GLN A:372 , TYR A:393 , HIS A:397 , GLU A:400 , GLY A:428 , ASP A:430 , GLY A:468 , PRO A:469 , NA A:1013 , HOH A:1107 , HOH A:1113 , HOH A:1139 , HOH A:1156 , HOH A:1177 , HOH A:1221 , HOH A:1248 , HOH A:1259 , HOH A:1279 , HOH A:1280 , HOH A:1284 , HOH A:1328 , HOH A:1342 , HOH A:1356 , HOH A:1389 , HOH A:1404 , HOH A:1418 , HOH A:1466 , HOH A:1472 , HOH A:1513 , HOH A:1521 , HOH A:1548binding site for Poly-Saccharide residues RAM A 1001 through GLC A 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XQH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XQH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XQH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XQH)

(-) Exons   (0, 0)

(no "Exon" information available for 4XQH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:594
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) hhhhhhhhhhh.hhhhh.--hhhhh....eeehhhhhh.....hhh................hhhhhhhhhhhhhhh..eeeee....eeee....hhhhhhh.........eeeee..eeee.hhhh.............hhhhh.....eeee...eee.......................eeee..eee.......eee.........eee..eee.............eee....eeee..eee..hhhhhhh...eee....eeee..eeeee...eeeeehhhhh.........eeee..eeee....eeeee............eeee..eeee.............eee.........eeee..eeee.........eee......eeee..eee..............eee.eee...................eee...eee..eeee............eee....eee.eeeee...........eee..hhhhh..eeeeeeeeeeeee....eeeeeee.........eeee.......................eeeeee......eeeeeeeeee.. Sec.struct. author (1)
     Sec.struct. author (2) ------------------eee--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xqh A 110 DPDQFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSFARNIACSVQLHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPSVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 709
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469||     485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705    
                                                                                                                                                                                                                                                                                                                                                                                                 469||                                                                                                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                  472|                                                                                                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                   477
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XQH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XQH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XQH)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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  4xqh
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  Q9AYY6_BPHK6 | Q9AYY6
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UniProtKB/TrEMBL
        Q9AYY6_BPHK6 | Q9AYY6: 2vji 2vjj 2x6w 2x6x 2x6y 2x85 4avz 4xkv 4xkw 4xl9 4xla 4xlc 4xle 4xlf 4xlh 4xm3 4xmy 4xn0 4xn3 4xnf 4xon 4xop 4xor 4xot 4xqf 4xqi 4xr6 4yej 4yel

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