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(-) Description

Title :  TAILSPIKE PROTEIN MUTANT E372Q OF E. COLI BACTERIOPHAGE HK620
 
Authors :  U. Gohlke, N. K. Broeker, J. J. Mueller, C. Uetrecht, U. Heinemann, R. Se S. Barbirz
Date :  30 May 12  (Deposition) - 26 Sep 12  (Release) - 16 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Viral Protein, Endo-N-Acetylglucosaminidase, O-Antigen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. K. Broeker, U. Gohlke, J. J. Muller, C. Uetrecht, U. Heinemann, R. Seckler, S. Barbirz
Single Amino Acid Exchange In Bacteriophage Hk620 Tailspike Protein Results In Thousand-Fold Increase Of Its Oligosaccharide Affinity.
Glycobiology V. 23 59 2013
PubMed-ID: 22923442  |  Reference-DOI: 10.1093/GLYCOB/CWS126
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL SPIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET-11D
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 111-710
    Mutation: YES
    Organism Scientific: SALMONELLA PHAGE HK620
    Organism Taxid: 155148

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
11441Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
11443Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:568 , ASN A:569 , TYR A:597 , ASP A:670 , ILE A:693 , ARG A:697 , HOH A:2252 , HOH A:2277 , HOH A:2337BINDING SITE FOR RESIDUE 144 A1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AVZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4AVZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AVZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AVZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4AVZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:598
 aligned with Q9AYY6_BPHK6 | Q9AYY6 from UniProtKB/TrEMBL  Length:710

    Alignment length:598
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702        
         Q9AYY6_BPHK6   113 DQFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSFARNIACSVELHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 710
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.hhhhh.eehhhhh.....eehhhhhh....hhhh................hhhhhhhhhhhhhhh..eeeee....eeee.......hhhh.eeee....eeeee..eeee.hhhh...eeeee.....hhhhh..eeeeeee...eee............eeeee...eeeeeee..eee.......eee.....ee.......eee..........eeeeee..........eee....hhhhheeeeee..........eeeee.eeeeeeehhhhh...............eeee..eeeeeee..................eeee..........eeeeee.....................eee.......eeeeee............eee..eeee........eee........ee...........eeee....eee................eeeee....eee.................eee..hhhhh...................................................................................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4avz A 112 DQFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSFARNIACSVQLHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 709
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AVZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AVZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AVZ)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9AYY6_BPHK6 | Q9AYY6)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9AYY6_BPHK6 | Q9AYY6: 2vji 2vjj 2x6w 2x6x 2x6y 2x85 4xkv 4xkw 4xl9 4xla 4xlc 4xle 4xlf 4xlh 4xm3 4xmy 4xn0 4xn3 4xnf 4xon 4xop 4xor 4xot 4xqf 4xqh 4xqi 4xr6 4yej 4yel

(-) Related Entries Specified in the PDB File

2vji TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620
2vjj TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
2x6w TAILSPIKE PROTEIN MUTANT E372Q OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
2x6x TAILSPIKE PROTEIN MUTANT D339N OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
2x6y TAILSPIKE PROTEIN MUTANT D339A OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
2x85 TAILSPIKE PROTEIN OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE