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(-) Description

Title :  TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
 
Authors :  J. J. Mueller, S. Barbirz, C. Uetrecht, R. Seckler, U. Heinemann
Date :  11 Dec 07  (Deposition) - 01 Jul 08  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.59
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Viral Protein, Endo-N-Acetylglucosaminidase, Viral Adhesion Protein, Right-Handed Parallel Beta-Helix, Hydrolase, Tailspike (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Barbirz, J. J. Mueller, C. Uetrecht, A. J. Clark, U. Heinemann, R. Seckler
Crystal Structure Of Escherichia Coli Phage Hk620 Tailspike: Podoviral Tailspike Endoglycosidase Modules Are Evolutionarily Related.
Mol. Microbiol. V. 69 303 2008
PubMed-ID: 18547389  |  Reference-DOI: 10.1111/J.1365-2958.2008.06311.X

(-) Compounds

Molecule 1 - TAILSPIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: LACKING THE N-TERMINAL HEAD-BINDING DOMAIN, RESIDUES 111-710
    Organism Scientific: SALMONELLA PHAGE HK620
    Organism Taxid: 155148
    Other Details: COMPLEXED WITH HEXASACCHARIDE
    Strain: H
    Synonym: TAILSPIKE PROTEIN HK620

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 16)

Asymmetric Unit (8, 16)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3GAL1Ligand/IonBETA-D-GALACTOSE
4GLC2Ligand/IonALPHA-D-GLUCOSE
5GOL7Ligand/IonGLYCEROL
6K1Ligand/IonPOTASSIUM ION
7NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
8RAM1Ligand/IonALPHA-L-RHAMNOSE
Biological Unit 1 (5, 39)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3GAL3Ligand/IonBETA-D-GALACTOSE
4GLC6Ligand/IonALPHA-D-GLUCOSE
5GOL21Ligand/IonGLYCEROL
6K-1Ligand/IonPOTASSIUM ION
7NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
8RAM3Ligand/IonALPHA-L-RHAMNOSE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:211 , RAM A:720 , HOH A:2137 , HOH A:2138 , HOH A:2203 , HOH A:2250 , HOH A:2719BINDING SITE FOR RESIDUE CA A 710
02AC2SOFTWARESER A:596 , TYR A:597 , ASN A:625BINDING SITE FOR RESIDUE CL A 711
03AC3SOFTWAREHIS A:212 , SER A:213 , GLN A:242 , RAM A:720BINDING SITE FOR RESIDUE K A 712
04AC4SOFTWAREARG A:140 , ASP A:144 , HOH A:2026 , HOH A:2048 , HOH A:2704BINDING SITE FOR RESIDUE GOL A 713
05AC5SOFTWARETYR A:409 , ASN A:440 , ASP A:441 , SER A:450 , HOH A:2444 , HOH A:2446 , HOH A:2706 , HOH A:2707 , HOH A:2708BINDING SITE FOR RESIDUE GOL A 714
06AC6SOFTWAREASN A:569 , GLU A:579 , TYR A:597 , ASP A:670 , ARG A:697 , HOH A:2564 , HOH A:2666 , HOH A:2670 , HOH A:2691BINDING SITE FOR RESIDUE GOL A 715
07AC7SOFTWARETYR A:131 , ASP A:147 , GLU A:148 , ARG A:149 , VAL A:150 , GLY A:189 , THR A:190 , HOH A:2108 , HOH A:2709BINDING SITE FOR RESIDUE GOL A 716
08AC8SOFTWARELYS A:608 , SER A:664 , ILE A:665 , GLU A:667 , ARG A:707 , GLN A:708 , HOH A:2710 , HOH A:2711BINDING SITE FOR RESIDUE GOL A 717
09AC9SOFTWARETHR A:633 , SER A:700 , ARG A:702 , HOH A:2602 , HOH A:2698 , HOH A:2713BINDING SITE FOR RESIDUE GOL A 718
10BC1SOFTWAREASP A:541 , LYS A:542 , ASN A:544 , GLU A:573 , GLN A:575 , HOH A:2534 , HOH A:2567 , HOH A:2569 , HOH A:2714 , HOH A:2715BINDING SITE FOR RESIDUE GOL A 719
11BC2SOFTWAREGLY A:211 , HIS A:212 , GLN A:242 , LEU A:282 , THR A:307 , TRP A:308 , THR A:311 , TRP A:314 , ASN A:315 , SER A:335 , ASP A:339 , SER A:341 , TYR A:344 , ASN A:346 , GLU A:372 , TYR A:393 , VAL A:395 , HIS A:397 , GLU A:400 , LEU A:427 , GLY A:428 , ASP A:430 , GLY A:468 , PRO A:469 , ASP A:470 , ASN A:471 , CA A:710 , K A:712 , HOH A:2138 , HOH A:2194 , HOH A:2203 , HOH A:2250 , HOH A:2302 , HOH A:2342 , HOH A:2403 , HOH A:2461 , HOH A:2468 , HOH A:2717 , HOH A:2718 , HOH A:2720 , HOH A:2721 , HOH A:2722 , HOH A:2723 , HOH A:2724 , HOH A:2725 , HOH A:2727 , HOH A:2728 , HOH A:2730 , HOH A:2731BINDING SITE FOR POLY-SACCHARIDE RESIDUES RAM A 720 THROUGH GLC A 725

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VJJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VJJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VJJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VJJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2VJJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:598
 aligned with Q9AYY6_BPHK6 | Q9AYY6 from UniProtKB/TrEMBL  Length:710

    Alignment length:598
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702        
         Q9AYY6_BPHK6   113 DQFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSFARNIACSVELHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 710
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Hea------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.hhhhh...hhhhh.......hhhhhh....hhhh................hhhhhhhhhhhhhhh..eeeee...eeeee....hhhhhhheeeeee..eeeeeeeeeeeeehhhh...eeeeee....hhhhh..eeeeeeee.eeeee..........eeeeeee.eeeeeeee.eeeee.....eeee....eee.eeeeeeeeee.........eeeeeee...eeeeeeeeee...hhhhheeeeeee..eeeeeeeeeeee.eeeeeeehhhhh.....eeeeeeeeeeeeeeeeeeeeeeee.......eeeeeeeeeeeeeee.........eeeeeee..........eeeeeeeeeeeeee.....eeeeeeee.....eeee.eeee..eeee.......eeeeeeeee...eee.........eeeeee..eeeeeeeeee..........eeeee....eee.eeeeee.........eeeee.hhhhh.eeeeeeeeeeeeeee...eeeeeeee........eeeee......eee..eeeeee...eeeeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vjj A 112 DQFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSFARNIACSVELHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 709
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VJJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VJJ)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: Head_binding] (4)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9AYY6_BPHK6 | Q9AYY6)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9AYY6_BPHK6 | Q9AYY6: 2vji 2x6w 2x6x 2x6y 2x85 4avz 4xkv 4xkw 4xl9 4xla 4xlc 4xle 4xlf 4xlh 4xm3 4xmy 4xn0 4xn3 4xnf 4xon 4xop 4xor 4xot 4xqf 4xqh 4xqi 4xr6 4yej 4yel

(-) Related Entries Specified in the PDB File

2vji TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620