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(-) Description

Title :  TAILSPIKE PROTEIN MUTANT E372Q OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH PENTASACCHARIDE
 
Authors :  U. Gohlke, N. K. Broeker, U. Heinemann, R. Seckler, S. Barbirz
Date :  16 Jan 15  (Deposition) - 27 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.06
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Helix, Protein-Carbohydrate Complex, Pectin Lyase Fold, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Gohlke, N. K. Broeker, S. Kunstmann, M. Santer, U. Heinemann, R. Lipowski, R. Seckler, S. Barbirz
Enthalpic Cost Of Water Removal From A Hydrophobic Glucose Binding Cavity On Hk620 Tailspike Protein.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL SPIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET11D
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: HEAD BINDING, UNP RESIDUES 114-710
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE HK620
    Organism Taxid: 155148

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 14)

Asymmetric Unit (8, 14)
No.NameCountTypeFull Name
1FMT6Ligand/IonFORMIC ACID
2GLA1Ligand/IonALPHA D-GALACTOSE
3GLC1Ligand/IonALPHA-D-GLUCOSE
4NA2Ligand/IonSODIUM ION
5NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7RAM1Ligand/IonALPHA-L-RHAMNOSE
8TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (7, 36)
No.NameCountTypeFull Name
1FMT18Ligand/IonFORMIC ACID
2GLA3Ligand/IonALPHA D-GALACTOSE
3GLC3Ligand/IonALPHA-D-GLUCOSE
4NA-1Ligand/IonSODIUM ION
5NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7RAM3Ligand/IonALPHA-L-RHAMNOSE
8TRS3Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:568 , ASN A:569 , TYR A:597 , ASP A:670 , ILE A:693 , ARG A:697 , HOH A:1194 , HOH A:1252 , HOH A:1320 , HOH A:1325 , HOH A:1390binding site for residue TRS A 1006
02AC2SOFTWARETYR A:597 , ASN A:625 , ASN A:668 , LEU A:669 , ASP A:670 , HOH A:1137 , HOH A:1205binding site for residue FMT A 1007
03AC3SOFTWARELEU A:669 , LYS A:680 , HOH A:1141 , HOH A:1308 , HOH A:1399 , HOH A:1664binding site for residue FMT A 1008
04AC4SOFTWAREARG A:140 , ASP A:144 , HOH A:1304binding site for residue FMT A 1009
05AC5SOFTWARESER A:279 , SER A:280 , HOH A:1123 , HOH A:1346 , HOH A:1448 , HOH A:1662binding site for residue FMT A 1010
06AC6SOFTWAREGLY A:167 , TYR A:197 , THR A:198 , TYR A:200 , HOH A:1104 , HOH A:1364 , HOH A:1522binding site for residue FMT A 1011
07AC7SOFTWAREPHE A:457 , TYR A:522 , GLN A:557 , HOH A:1158binding site for residue FMT A 1012
08AC8SOFTWAREGLY A:211 , RAM A:1001 , HOH A:1132 , HOH A:1203 , HOH A:1665 , HOH A:1755binding site for residue NA A 1013
09AC9SOFTWAREALA A:565 , SER A:592 , GLN A:594 , HOH A:1720 , HOH A:1726 , HOH A:1736binding site for residue NA A 1014
10AD1SOFTWAREGLY A:211 , HIS A:212 , GLN A:242 , LEU A:282 , THR A:307 , TRP A:308 , THR A:311 , TRP A:314 , ASN A:315 , ASP A:339 , SER A:341 , TYR A:344 , ASN A:346 , GLN A:372 , HIS A:374 , TYR A:393 , VAL A:395 , HIS A:397 , GLU A:400 , ASN A:471 , NA A:1013 , HOH A:1123 , HOH A:1134 , HOH A:1162 , HOH A:1203 , HOH A:1207 , HOH A:1216 , HOH A:1255 , HOH A:1279 , HOH A:1323 , HOH A:1347 , HOH A:1374 , HOH A:1406 , HOH A:1437 , HOH A:1463 , HOH A:1484 , HOH A:1589 , HOH A:1628 , HOH A:1646 , HOH A:1659 , HOH A:1662 , HOH A:1665 , HOH A:1817binding site for Poly-Saccharide residues RAM A 1001 through NDG A 1005

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XOT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XOT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XOT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XOT)

(-) Exons   (0, 0)

(no "Exon" information available for 4XOT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:597
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.hhhhh...hhhhh.......hhhhhh...hhhhh................hhhhhhhhhhhhhhh...................hhhhhhh.....................hhhh.............hhhhh...........................................................................................................hhhhh.............................hhhhh.........................................................................................................................................................................................................................hhhhh...................................................................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xot A 113 QFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSFARNIACSVQLHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 709
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XOT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XOT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XOT)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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        Q9AYY6_BPHK6 | Q9AYY6: 2vji 2vjj 2x6w 2x6x 2x6y 2x85 4avz 4xkv 4xkw 4xl9 4xla 4xlc 4xle 4xlf 4xlh 4xm3 4xmy 4xn0 4xn3 4xnf 4xon 4xop 4xor 4xqf 4xqh 4xqi 4xr6 4yej 4yel

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