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(-) Description

Title :  TAILSPIKE PROTEIN MUTANT E372Q (DELTA D470/N471) OF E. COLI BACTERIOPHAGE HK620
 
Authors :  U. Gohlke, N. K. Broeker, U. Heinemann, R. Seckler, S. Barbirz
Date :  19 Jan 15  (Deposition) - 27 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Helix, Protein-Carbohydrate Complex, Pectin Lyase Fold, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Gohlke, N. K. Broeker, S. Kunstmann, M. Santer, U. Heinemann, R. Lipowski, R. Seckler, S. Barbirz
Enthalpic Cost Of Water Removal From A Hydrophobic Glucose Binding Cavity On Hk620 Tailspike Protein.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL SPIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11D
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HEAD BINDING, UNP RESIDUES 111-710
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE HK620
    Organism Taxid: 155148

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1FMT3Ligand/IonFORMIC ACID
2NA1Ligand/IonSODIUM ION
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1FMT9Ligand/IonFORMIC ACID
2NA-1Ligand/IonSODIUM ION
3TRS3Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:568 , ASN A:569 , TYR A:597 , ASP A:670 , ILE A:693 , ARG A:697 , HOH A:919 , HOH A:960 , HOH A:1009 , HOH A:1031 , HOH A:1073binding site for residue TRS A 801
2AC2SOFTWARETYR A:597 , ASN A:625 , LEU A:669 , ASP A:670 , HOH A:904 , HOH A:1207binding site for residue FMT A 802
3AC3SOFTWAREARG A:140 , ASP A:144 , HOH A:962binding site for residue FMT A 803
4AC4SOFTWARETYR A:639 , ASN A:640 , HOH A:901binding site for residue FMT A 804
5AC5SOFTWAREALA A:565 , SER A:592 , GLN A:594 , HOH A:1305 , HOH A:1465 , HOH A:1533binding site for residue NA A 805

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XQF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XQF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XQF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XQF)

(-) Exons   (0, 0)

(no "Exon" information available for 4XQF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:594
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh.hhhhh...hhhhh.......hhhhhh.....hhh................hhhhhhhhhhhhhhh...................hhhhhhh.....................hhhh.............hhhhh...........................................................................................................hhhhh...............................hhh...................................................................................................................................................................................................................hhhhh...................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xqf A 110 DPDQFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSFARNIACSVQLHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 709
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469|      485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705    
                                                                                                                                                                                                                                                                                                                                                                                                 469|                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                  476
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XQF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XQF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XQF)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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  4xqf
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  Q9AYY6_BPHK6 | Q9AYY6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9AYY6_BPHK6 | Q9AYY6: 2vji 2vjj 2x6w 2x6x 2x6y 2x85 4avz 4xkv 4xkw 4xl9 4xla 4xlc 4xle 4xlf 4xlh 4xm3 4xmy 4xn0 4xn3 4xnf 4xon 4xop 4xor 4xot 4xqh 4xqi 4xr6 4yej 4yel

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XQF)