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(-) Description

Title :  TAILSPIKE PROTEIN DOUBLE MUTANT D339A/E372A OF E. COLI BACTERIOPHAGE HK620
 
Authors :  U. Gohlke, N. K. Broeker, U. Heinemann, R. Seckler, S. Barbirz
Date :  13 Jan 15  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Helix, Protein-Carbohydrate Complex, Pectin Lyase Fold, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Gohlke, N. K. Broeker, S. Kunstmann, M. Santer, U. Heinemann, R. Lipowski, R. Seckler, S. Barbirz
Enthalpic Cost Of Water Removal From A Hydrophobic Glucose Binding Cavity On Hk620 Tailspike Protein.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL SPIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11D
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HEAD BINDING, RESIDUES 112-710
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE HK620
    Organism Taxid: 155148

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1FMT5Ligand/IonFORMIC ACID
2NA1Ligand/IonSODIUM ION
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1FMT15Ligand/IonFORMIC ACID
2NA-1Ligand/IonSODIUM ION
3TRS3Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:568 , ASN A:569 , TYR A:597 , ASP A:670 , ILE A:693 , ARG A:697 , HOH A:923 , HOH A:935 , HOH A:943 , HOH A:955 , HOH A:1151binding site for residue TRS A 801
2AC2SOFTWARETYR A:597 , ASN A:625 , LEU A:669 , ASP A:670 , HOH A:901 , HOH A:939binding site for residue FMT A 802
3AC3SOFTWAREVAL A:634 , ASN A:635 , THR A:650 , ASP A:651 , TYR A:654binding site for residue FMT A 803
4AC4SOFTWAREARG A:140 , ASP A:144 , HOH A:959binding site for residue FMT A 804
5AC5SOFTWAREASP A:541 , LYS A:542 , ASN A:544 , GLN A:575 , HOH A:942 , HOH A:1004binding site for residue FMT A 805
6AC6SOFTWAREGLY A:623 , ALA A:624 , GLU A:667 , ALA A:681 , HOH A:953 , HOH A:1037 , HOH A:1138binding site for residue FMT A 806
7AC7SOFTWAREALA A:565 , SER A:592 , GLN A:594 , HOH A:1278 , HOH A:1346binding site for residue NA A 807

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XLH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XLH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XLH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XLH)

(-) Exons   (0, 0)

(no "Exon" information available for 4XLH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:599
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) hhhhhhhhhh.hhhhh.--hhhhh....eeehhhhhh.....hhh................hhhhhhhhhhhhhhh..eeeee....eeee.....hhhhhh.........eeeee..eeee.hhhh.............hhhhh.....eeee...eee.......................eeee..eee.......eee........eeee..eee.............eee....eeee..eee....hhhhh...eee....eeee..eeeee...eeeeehhhhh.........eeee..eeee....eeeee............eeee..eeee.............eee...............eeee..eeee.........eee......eeee..eee..............eee.eee.........................eee..eeee............eee....eee.eeeee...........eee..hhhhh..eeeeeeeeeeeee....eeeeeee.........eeee.......................eeeeee......eeeeeeeeee.. Sec.struct. author (1)
     Sec.struct. author (2) -----------------eee--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xlh A 111 PDQFRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNAAHSTVYVNCPYSGVESCYFSMSSSFARNIACSVALHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 709
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XLH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XLH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XLH)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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  4xlh
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  Q9AYY6_BPHK6 | Q9AYY6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9AYY6_BPHK6 | Q9AYY6: 2vji 2vjj 2x6w 2x6x 2x6y 2x85 4avz 4xkv 4xkw 4xl9 4xla 4xlc 4xle 4xlf 4xm3 4xmy 4xn0 4xn3 4xnf 4xon 4xop 4xor 4xot 4xqf 4xqh 4xqi 4xr6 4yej 4yel

(-) Related Entries Specified in the PDB File

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