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(-) Description

Title :  TAILSPIKE PROTEIN DOUBLE MUTANT D339N/E372A OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
 
Authors :  U. Gohlke, N. K. Broeker, U. Heinemann, R. Seckler, S. Barbirz
Date :  13 Jan 15  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Helix, Protein-Carbohydrate Complex, Pectin Lyase Fold, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Gohlke, N. K. Broeker, S. Kunstmann, M. Santer, U. Heinemann, R. Lipowski, R. Seckler, S. Barbirz
Enthalpic Cost Of Water Removal From A Hydrophobic Glucose Binding Cavity On Hk620 Tailspike Protein.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL SPIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11D
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HEAD BINDING, UNP RESIDUES 115-710
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE HK620
    Organism Taxid: 155148

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 12)

Asymmetric Unit (8, 12)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2GLA1Ligand/IonALPHA D-GALACTOSE
3GLC2Ligand/IonALPHA-D-GLUCOSE
4NA3Ligand/IonSODIUM ION
5NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7RAM1Ligand/IonALPHA-L-RHAMNOSE
8TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (7, 27)
No.NameCountTypeFull Name
1FMT6Ligand/IonFORMIC ACID
2GLA3Ligand/IonALPHA D-GALACTOSE
3GLC6Ligand/IonALPHA-D-GLUCOSE
4NA-1Ligand/IonSODIUM ION
5NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7RAM3Ligand/IonALPHA-L-RHAMNOSE
8TRS3Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:568 , ASN A:569 , TYR A:597 , ASP A:670 , ILE A:693 , ARG A:697 , HOH A:1186 , HOH A:1201 , HOH A:1225 , HOH A:1296 , HOH A:1411binding site for residue TRS A 1007
2AC2SOFTWAREARG A:140 , ASP A:144 , HOH A:1106 , HOH A:1238binding site for residue FMT A 1008
3AC3SOFTWARETYR A:597 , ASN A:625 , LEU A:669 , ASP A:670 , HOH A:1118 , HOH A:1209binding site for residue FMT A 1009
4AC4SOFTWAREVAL A:483 , THR A:512 , ASN A:517 , HOH A:1187 , HOH A:1689 , HOH A:1800binding site for residue NA A 1010
5AC5SOFTWAREALA A:565 , SER A:592 , GLN A:594 , HOH A:1640 , HOH A:1645 , HOH A:1647binding site for residue NA A 1011
6AC6SOFTWAREGLY A:211 , RAM A:1001 , HOH A:1252 , HOH A:1486 , HOH A:1681binding site for residue NA A 1012
7AC7SOFTWAREGLY A:211 , HIS A:212 , GLN A:242 , LEU A:282 , THR A:307 , TRP A:308 , THR A:311 , TRP A:314 , ASN A:315 , ASN A:339 , SER A:341 , TYR A:344 , ASN A:346 , TYR A:393 , HIS A:397 , GLU A:400 , LEU A:427 , GLY A:428 , ASP A:430 , GLY A:468 , PRO A:469 , ASP A:470 , ASN A:471 , NA A:1012 , HOH A:1117 , HOH A:1152 , HOH A:1162 , HOH A:1229 , HOH A:1232 , HOH A:1252 , HOH A:1260 , HOH A:1274 , HOH A:1308 , HOH A:1314 , HOH A:1330 , HOH A:1349 , HOH A:1372 , HOH A:1373 , HOH A:1404 , HOH A:1413 , HOH A:1471 , HOH A:1484 , HOH A:1486 , HOH A:1529 , HOH A:1602binding site for Poly-Saccharide residues RAM A 1001 through GLC A 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XLE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XLE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XLE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XLE)

(-) Exons   (0, 0)

(no "Exon" information available for 4XLE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:596
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.hhhhh.eehhhhh.....eehhhhhh...hhhhh................hhhhhhhhhhhhhhh..eeeee....eeee.......hhhh.eeee....eeeee..eeee.hhhh...eeeee.....hhhhh..eeeeeee...eee............eeeee...eeeeeee..eee.......eee.....eeeeeee..eee..........eeeeee....eeee..eee....hhhhheeeeee....eeee..eeeee.eeeeeeehhhhh.....eeeeeeee..eeee..eeeeeee........eeeeeeee..eeee..........eeeeee............eeeeeee..eee.......eeeeee......eeee..eee..eeee........eee.eee....ee...........eeee....eee..eeee..........eeeee....eee.eeeee...........eee..hhhhh..eeeeeeeeeeeee....eeeeeee.........eeee........ee...eeee.....eeeeeee......eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xle A 114 FRAIIESPEGAGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNANHSTVYVNCPYSGVESCYFSMSSSFARNIACSVALHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITLRANLNGCTFIANNFDCRYMVYNAPGTTSPVVQNLVWDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSMFSCILFPASCQLSYSKITVDSAWTKSMSNTAVFEGNQQAGANVYVSYPATVNLTSYNTQGAVPFFSTDTNYAWVTSAYSLSINENLDFSPPATYTNKANGQLVGVGYNEIGGVRSVSVRLMLQRQV 709
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XLE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XLE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XLE)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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        Q9AYY6_BPHK6 | Q9AYY6: 2vji 2vjj 2x6w 2x6x 2x6y 2x85 4avz 4xkv 4xkw 4xl9 4xla 4xlc 4xlf 4xlh 4xm3 4xmy 4xn0 4xn3 4xnf 4xon 4xop 4xor 4xot 4xqf 4xqh 4xqi 4xr6 4yej 4yel

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