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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF ACTIVE-LIKE NEUROTENSIN RECEPTOR

Authors :   B. E. Krumm, J. F. White, P. Shah, R. Grisshammer

Date :   23 Dec 14 (Deposition) - 29 Jul 15 (Release) - 05 Aug 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Membrane Protein, G Protein-Coupled Receptor, Gpcr, Neurotensin Receptor, Ntsr1, Signaling Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. E. Krumm, J. F. White, P. Shah, R. Grisshammer
Structural Prerequisites For G-Protein Activation By The Neurotensin Receptor.
Nat Commun V. 6 7895 2015
PubMed-ID: 26205105 | Reference-DOI: 10.1038/NCOMMS8895

Molecule 1 - NEUROTENSIN RECEPTOR TYPE 1, ENDOLYSIN CHIMERA
	Chains	:	A
	EC Number	:	3.2.1.17
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Plasmid	:	PFASTBAC1
	Expression System Strain	:	CABBAGE LOOPER
	Expression System Taxid	:	7111
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 43-396 (P20789), RESIDUES 2-161 (P00720)
	Gene	:	NTSR1, NTSR
	Mutation	:	YES
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS, ENTEROBACTERIA PHAGE T4
	Organism Taxid	:	10116, 10665
	Synonym	:	NTR1, HIGH-AFFINITY LEVOCABASTINE-INSENSITIVE NEUROTENSIN RECEPTOR, NTRH,LYSIS PROTEIN, LYSOZYME, MURAMIDASE

Molecule 2 - NEUROTENSIN/NEUROMEDIN N
	Chains	:	B
	Engineered	:	YES
	Fragment	:	UNP RESIDUES 157-162
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synthetic	:	YES

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 5)

No.	Name	Count	Type	Full Name
1	1PE	2	Ligand/Ion	PENTAETHYLENE GLYCOL
2	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	FLC	1	Ligand/Ion	CITRATE ANION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:258 , LEU A:308 , ARG A:311 , ILE A:315	binding site for residue 1PE A 1201
2	AC2	SOFTWARE	HIS A:305 , ARG A:377	binding site for residue 1PE A 1202
3	AC3	SOFTWARE	GLY A:1030 , LYS A:1035 , PHE A:1104 , GLN A:1105 , MET A:1106 , ASP A:1159	binding site for residue EPE A 1203
4	AC4	SOFTWARE	ASP A:56 , VAL A:57 , TRP A:130 , HIS A:132	binding site for residue FLC A 1204
5	AC5	SOFTWARE	ARG A:1125 , ARG B:8	binding site for residue PEG A 1205

Asymmetric/Biological Unit

No.	Residues
1	A:142	-	A:225

Asymmetric/Biological Unit

No.	Residues
1	His A:133	-	Pro A:134

(no "SAP(SNP)/Variant" information available for 4XEE)

(no "PROSITE Motif" information available for 4XEE)

(no "Exon" information available for 4XEE)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee......hhh.eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.....hhhhhhhhh..eeeeee.....eeee..eeee...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xee A   50 GPNSDLDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVERYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVPGRVQALRHGVLVLRAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALFYASSAINPILYNLVSANFRQVFLSTLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGS 1165
                                    59        69        79        89  ||   106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266 ||    304       314       324       334       344       354       364       374       384|     1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161    
                                                                     92|                                                                                                                                                                     268|                                                                                    384|                                                                                                                                                                   
                                                                     100                                                                                                                                                                      297                                                                                    1002

Chain B from PDB  Type:PROTEIN  Length:6
                                       
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                4xee B    8 RRPYIL   13

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4XEE)

(no "CATH Domain" information available for 4XEE)

(no "Pfam Domain" information available for 4XEE)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		1PE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EPE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FLC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		His A:133 - Pro A:134	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Sites (5, 5)

SS Bonds (1, 1)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (83, 85)

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