4X4H - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 35.7 MGY

Authors :   C. S. Bury, J. E. Mcgeehan, E. F. Garman

Date :   02 Dec 14 (Deposition) - 11 Mar 15 (Release) - 11 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Protein-Dna Complex, Radiation Damage, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Bury, E. F. Garman, H. M. Ginn, R. B. Ravelli, I. Carmichael, G. Kneale, J. E. Mcgeehan
Radiation Damage To Nucleoprotein Complexes In Macromolecular Crystallography.
J. Synchrotron Radiat. V. 22 213 2015
PubMed-ID: 25723923 | Reference-DOI: 10.1107/S1600577514026289
(for further references see the PDB file header)

Molecule 1 - REGULATORY PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET23
	Expression System Taxid	:	469008
	Expression System Variant	:	GOLD
	Expression System Vector Type	:	PLASMID
	Gene	:	ESP1396IC
	Organism Scientific	:	ENTEROBACTER SP. RFL1396
	Organism Taxid	:	211595
	Synonym	:	CONTROLLER PROTEIN

Molecule 2 - 35-MER DNA
	Chains	:	E
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Other Details	:	CHEMICALLY SYNTHESISED DNA
	Synonym	:	OPERATOR DNA
	Synthetic	:	YES

Molecule 3 - 35-MER DNA
	Chains	:	F
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Other Details	:	CHEMICALLY SYNTHESISED DNA
	Synonym	:	OPERATOR DNA
	Synthetic	:	YES

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 4X4H)

(no "Site" information available for 4X4H)

(no "SS Bond" information available for 4X4H)

(no "Cis Peptide Bond" information available for 4X4H)

(no "SAP(SNP)/Variant" information available for 4X4H)

(no "PROSITE Motif" information available for 4X4H)

(no "Exon" information available for 4X4H)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:76
                                                                                                           
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  4x4h A  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    11        21        31        41        51        61        71

Chain B from PDB  Type:PROTEIN  Length:77
                                                                                                            
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  4x4h B  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
                                    11        21        31        41        51        61        71

Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                            
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  4x4h C  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
                                    11        21        31        41        51        61        71

Chain D from PDB  Type:PROTEIN  Length:76
                                                                                                           
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  4x4h D  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    11        21        31        41        51        61        71

Chain E from PDB  Type:DNA  Length:35
                                                                  
                  4x4h E  1 ATGTGACTTATAGTCCGTGTGATTATAGTCAACAT 35
                                    10        20        30

Chain F from PDB  Type:DNA  Length:35
                                                                  
                  4x4h F  1 ATGTTGACTATAATCACACGGACTATAAGTCACAT 35
                                    10        20        30

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4X4H)

(no "CATH Domain" information available for 4X4H)

(no "Pfam Domain" information available for 4X4H)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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3clc	THE NEW STRUCTURE IS PART OF A RADIATION DAMAGE STUDY ON THE PROTEIN-DNA COMPLEX WITH PDB CODE 3CLC
4x4b	IN THIS RADIATION DAMAGE STUDY, 4X4B IS THE SAME PROTEIN-DNA COMPLEX AT A DOSE (DWD) OF 2.1MGY
4x4c	IN THIS RADIATION DAMAGE STUDY, 4X4C IS THE SAME PROTEIN-DNA COMPLEX AT A DOSE (DWD) OF 6.2MGY
4x4d	IN THIS RADIATION DAMAGE STUDY, 4X4D IS THE SAME PROTEIN-DNA COMPLEX AT A DOSE (DWD) OF 10.3MGY
4x4e	IN THIS RADIATION DAMAGE STUDY, 4X4E IS THE SAME PROTEIN-DNA COMPLEX AT A DOSE (DWD) OF 14.4MGY
4x4f	IN THIS RADIATION DAMAGE STUDY, 4X4F IS THE SAME PROTEIN-DNA COMPLEX AT A DOSE (DWD) OF 20.6MGY
4x4g	IN THIS RADIATION DAMAGE STUDY, 4X4G IS THE SAME PROTEIN-DNA COMPLEX AT A DOSE (DWD) OF 26.8MGY

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