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(-) Description

Title :  CRYSTAL STRUCTURE OF THE WILD-TYPE RESTRICTION-MODIFICATION CONTROLLER PROTEIN C.ESP1396I
 
Authors :  N. J. Ball, J. E. Mcgeehan, S. J. Thresh, S. D. Streeter, G. G. Kneale
Date :  05 Feb 09  (Deposition) - 25 Aug 09  (Release) - 28 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Biol. Unit 7:  M,N  (1x)
Keywords :  Transcriptional Regulator, Helix-Turn-Helix, Restriction- Modification, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Ball, S. D. Streeter, G. G. Kneale, J. E. Mcgeehan
Structure Of The Restriction-Modification Controller Protei C. Esp1396I.
Acta Crystallogr. , Sect. D V. 65 900 2009
PubMed-ID: 19690367  |  Reference-DOI: 10.1107/S0907444909020514
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - REGULATORY PROTEIN
    ChainsA, B, C, D, E, F, G, H, I, J, K, L, M, N
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28
    Expression System StrainBL21(DE3)GOLD
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneESP1396IC
    Organism ScientificENTEROBACTER SP.
    Organism Taxid211595
    StrainRFL1396

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric Unit ABCDEFGHIJKLMN
Biological Unit 1 (1x)AB            
Biological Unit 2 (1x)  CD          
Biological Unit 3 (1x)    EF        
Biological Unit 4 (1x)      GH      
Biological Unit 5 (1x)        IJ    
Biological Unit 6 (1x)          KL  
Biological Unit 7 (1x)            MN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3G5G)

(-) Sites  (0, 0)

(no "Site" information available for 3G5G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3G5G)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys E:77 -His E:78
2Lys I:77 -His I:78

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3G5G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3G5G)

(-) Exons   (0, 0)

(no "Exon" information available for 3G5G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:76
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:76
                                    11        21        31        41        51        61        71      
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
               SCOP domains d3g5ga_ A: automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3g5g A  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    11        21        31        41        51        61        71      

Chain B from PDB  Type:PROTEIN  Length:78
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:78
                                    11        21        31        41        51        61        71        
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
               SCOP domains d3g5gb_ B: automated matches                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3g5g B  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
                                    11        21        31        41        51        61        71        

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:76
                                    11        21        31        41        51        61        71      
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
               SCOP domains d3g5gc_ C: automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3g5g C  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    11        21        31        41        51        61        71      

Chain D from PDB  Type:PROTEIN  Length:77
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:77
                                    12        22        32        42        52        62        72       
          Q8GGH0_9ENTR    3 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
               SCOP domains d3g5gd_ D: automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3g5g D  3 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
                                    12        22        32        42        52        62        72       

Chain E from PDB  Type:PROTEIN  Length:77
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:77
                                    11        21        31        41        51        61        71       
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
               SCOP domains d3g5ge_ E: automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3g5g E  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
                                    11        21        31        41        51        61        71       

Chain F from PDB  Type:PROTEIN  Length:77
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:77
                                    11        21        31        41        51        61        71       
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
               SCOP domains d3g5gf_ F: automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3g5g F  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
                                    11        21        31        41        51        61        71       

Chain G from PDB  Type:PROTEIN  Length:76
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:76
                                    11        21        31        41        51        61        71      
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
               SCOP domains d3g5gg_ G: automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3g5g G  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    11        21        31        41        51        61        71      

Chain H from PDB  Type:PROTEIN  Length:78
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:78
                                    11        21        31        41        51        61        71        
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
               SCOP domains d3g5gh_ H: automated matches                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3g5g H  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
                                    11        21        31        41        51        61        71        

Chain I from PDB  Type:PROTEIN  Length:77
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:77
                                    11        21        31        41        51        61        71       
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
               SCOP domains d3g5gi_ I: automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3g5g I  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 78
                                    11        21        31        41        51        61        71       

Chain J from PDB  Type:PROTEIN  Length:78
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:78
                                    11        21        31        41        51        61        71        
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
               SCOP domains d3g5gj_ J: automated matches                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3g5g J  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 79
                                    11        21        31        41        51        61        71        

Chain K from PDB  Type:PROTEIN  Length:76
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:76
                                    11        21        31        41        51        61        71      
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
               SCOP domains d3g5gk_ K: automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3g5g K  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    11        21        31        41        51        61        71      

Chain L from PDB  Type:PROTEIN  Length:76
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:76
                                    11        21        31        41        51        61        71      
          Q8GGH0_9ENTR    2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
               SCOP domains d3g5gl_ L: automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3g5g L  2 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    11        21        31        41        51        61        71      

Chain M from PDB  Type:PROTEIN  Length:77
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:77
                                    10        20        30        40        50        60        70       
          Q8GGH0_9ENTR    1 MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
               SCOP domains d3g5gm_ M: automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3g5g M  1 MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    10        20        30        40        50        60        70       

Chain N from PDB  Type:PROTEIN  Length:75
 aligned with Q8GGH0_9ENTR | Q8GGH0 from UniProtKB/TrEMBL  Length:79

    Alignment length:75
                                    12        22        32        42        52        62        72     
          Q8GGH0_9ENTR    3 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
               SCOP domains d3g5gn_ N: automated matches                                                SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                  3g5g N  3 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 77
                                    12        22        32        42        52        62        72     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 14)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3G5G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3G5G)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N   (Q8GGH0_9ENTR | Q8GGH0)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

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    Lys E:77 - His E:78   [ RasMol ]  
    Lys I:77 - His I:78   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8GGH0_9ENTR | Q8GGH03clc 3fya 3s8q 3ufd 4f8d 4fbi 4fn3 4i6r 4i6t 4i6u 4i8t 4ia8 4ivz 4iwr 4x4b 4x4c 4x4d 4x4e 4x4f 4x4g 4x4h 4x4i

(-) Related Entries Specified in the PDB File

3clc C.ESP1396I TETRAMER BOUND TO 35MER DNA
3fya R35A MUTATION OF C.ESP1396I