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(-) Description

Title :  CRYSTAL STRUCTURE OF HCV NS3/4A PROTEASE IN COMPLEX WITH AN ASUNAPREVIR P1-P3 MACROCYCLIC ANALOG.
 
Authors :  D. I. Soumana, A. Ali, C. A. Schiffer
Date :  20 Sep 14  (Deposition) - 15 Oct 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hcv Drug Resistance, Protease-Inhibitor Complex, Asunaprevir, Macrocycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. I. Soumana, A. Ali, C. A. Schiffer
Structural Analysis Of Asunaprevir Resistance In Hcv Ns3/4A Protease.
Acs Chem. Biol. V. 9 2485 2014
PubMed-ID: 25243902  |  Reference-DOI: 10.1021/CB5006118

(-) Compounds

Molecule 1 - GENOME POLYPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1030-1205
    Organism Scientific: HEPATITIS C VIRUS SUBTYPE 1A
    Organism Taxid: 31646

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
13M72Ligand/IonTERT-BUTYL [(2R,6S,12Z,13AS,14AR,16AS)-2-[(7-CHLORO-4-METHOXYISOQUINOLIN-1-YL)OXY]-14A-{[CYCLOPROPYL(DIHYDROXY)-LAMBDA~4~-SULFANYL]CARBAMOYL}-5,16-DIOXO-1,2,3,5,6,7,8,9,10,11,13A,14,14A,15,16,16A-HEXADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4]DIAZACYCLOPENTADECIN-6-YL]CARBAMATE
2SO42Ligand/IonSULFATE ION
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
13M71Ligand/IonTERT-BUTYL [(2R,6S,12Z,13AS,14AR,16AS)-2-[(7-CHLORO-4-METHOXYISOQUINOLIN-1-YL)OXY]-14A-{[CYCLOPROPYL(DIHYDROXY)-LAMBDA~4~-SULFANYL]CARBAMOYL}-5,16-DIOXO-1,2,3,5,6,7,8,9,10,11,13A,14,14A,15,16,16A-HEXADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4]DIAZACYCLOPENTADECIN-6-YL]CARBAMATE
2SO42Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
13M71Ligand/IonTERT-BUTYL [(2R,6S,12Z,13AS,14AR,16AS)-2-[(7-CHLORO-4-METHOXYISOQUINOLIN-1-YL)OXY]-14A-{[CYCLOPROPYL(DIHYDROXY)-LAMBDA~4~-SULFANYL]CARBAMOYL}-5,16-DIOXO-1,2,3,5,6,7,8,9,10,11,13A,14,14A,15,16,16A-HEXADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4]DIAZACYCLOPENTADECIN-6-YL]CARBAMATE
2SO4-1Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:1041 , PHE A:1043 , HIS A:1057 , GLY A:1058 , VAL A:1078 , ASP A:1081 , LEU A:1135 , LYS A:1136 , GLY A:1137 , SER A:1138 , ALA A:1139 , PHE A:1154 , ARG A:1155 , ALA A:1156 , ALA A:1157binding site for residue 3M7 A 1201
2AC2SOFTWARETYR A:1006 , GLN A:1008 , HOH A:1302 , HOH A:1306 , TYR B:1056binding site for residue SO4 A 1202
3AC3SOFTWARETYR A:1056 , HOH A:1314 , HOH A:1317 , TYR B:1006 , GLN B:1008binding site for residue SO4 A 1203
4AC4SOFTWARECYS A:1097 , CYS A:1099 , CYS A:1145 , HIS A:1149binding site for residue ZN A 1204
5AC5SOFTWAREGLN B:1041 , PHE B:1043 , HIS B:1057 , VAL B:1078 , ASP B:1081 , LEU B:1135 , LYS B:1136 , GLY B:1137 , SER B:1138 , ALA B:1139 , PHE B:1154 , ARG B:1155 , ALA B:1156 , ALA B:1157binding site for residue 3M7 B 1201
6AC6SOFTWARECYS B:1097 , CYS B:1099 , CYS B:1145 , HIS B:1149binding site for residue ZN B 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WH8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WH8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WH8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WH8)

(-) Exons   (0, 0)

(no "Exon" information available for 4WH8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeeee......eeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeeehhhhh..............eee....eeeee................eeeee.....eeeeee....eeeeeeeee.hhh......eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4wh8 A  982 HMASMKKKGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSAGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTM 1179
                                   991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171        


Chain B from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeeee......eeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeehhhhhh..............eee....eeeee................eeeee.....eeeeee....eeeeeeeee.hhh......eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4wh8 B  982 HMASMKKKGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSAGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTM 1179
                                   991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WH8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WH8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WH8)

(-) Gene Ontology  (31, 31)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A8DG50_9HEPC | A8DG50: 5voj 5vp9
UniProtKB/TrEMBL
        A8DG50_9HEPC | A8DG50: 3m5l 3m5m 3m5n 3m5o 3rc6 3su0 3su1 3su2 3su3 3su4 3su5 3su6 3sud 3sue 3suf 3sug 3sv6 3sv7 3sv8 3sv9 4nwk 4nwl 4wh6

(-) Related Entries Specified in the PDB File

4wf8
4wh6 SAME NS3/4A PROTEASE AS 4WF8 BUT IS BOUND BY A DIFFERENT INHIBITOR (ASUNAPREVIR MACROCYCLIC ANALOG)