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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 1-(( 4-(5-METHYL-1-OXO-1,2-DIHYDROISOQUINOLIN-3-YL)PHENYL) METHYL)PYRROLIDIN-1-IUM
 
Authors :  T. Haikarainen, M. Narwal, L. Lehtio
Date :  08 Aug 14  (Deposition) - 29 Jul 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Diphtheria Toxin Like Fold, Adp- Ribosylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. A. Paine, A. Nathubhai, E. C. Y. Woon, P. T. Sunderland, P. J. Wood, M. F. Mahon, M. D. Lloyd, A. S. Thompson, T. Haikarainen, M. Narwal, L. Lehtio, M. D. Threadgill
Exploration Of The Nicotinamide-Binding Site Of The Tankyrases, Identifying 3-Arylisoquinolin-1-Ones As Potent And Selective Inhibitors In Vitro.
Bioorg. Med. Chem. V. 23 5891 2015
PubMed-ID: 26189030  |  Reference-DOI: 10.1016/J.BMC.2015.06.061

(-) Compounds

Molecule 1 - TANKYRASE-2
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PNIC28-BSA4
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA 2
    Fragment: C-TERMINAL FRAGMENT, RESIDUES 946-1162
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TANK2, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6, ARTD 6, POLY ADP-RIBOSE POLYMERASE 5B, TNKS-2, TRF1-INTERACTING ANKYRIN -RELATED ADP-RIBOSE POLYMERASE 2, TANKYRASE II, TANKYRASE-LIKE PROTEIN, TANKYRASE-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO44Ligand/IonSULFATE ION
3U1T2Ligand/Ion5-METHYL-3-[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]ISOQUINOLIN-1(2H)-ONE
4ZN2Ligand/IonZINC ION
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
3U1T1Ligand/Ion5-METHYL-3-[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]ISOQUINOLIN-1(2H)-ONE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
3U1T1Ligand/Ion5-METHYL-3-[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]ISOQUINOLIN-1(2H)-ONE
4ZN-1Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:1031 , GLY A:1032 , PHE A:1035 , ALA A:1049 , TYR A:1050 , TYR A:1060 , ALA A:1062 , LYS A:1067 , SER A:1068 , TYR A:1071 , GLU A:1138BINDING SITE FOR RESIDUE U1T A2162
02AC2SOFTWAREHIS B:1031 , GLY B:1032 , PHE B:1035 , TYR B:1050 , TYR B:1060 , ALA B:1062 , LYS B:1067 , SER B:1068 , TYR B:1071 , ILE B:1075 , GLU B:1138BINDING SITE FOR RESIDUE U1T B2162
03AC3SOFTWARECYS B:1081 , HIS B:1084 , CYS B:1089 , CYS B:1092BINDING SITE FOR RESIDUE ZN B2163
04AC4SOFTWARECYS A:1081 , HIS A:1084 , CYS A:1089 , CYS A:1092BINDING SITE FOR RESIDUE ZN A2163
05AC5SOFTWAREARG A:977 , HIS A:979 , ARG A:980 , LYS A:1067 , GLN A:1070 , HOH A:2033 , HOH A:2035 , HOH A:2104BINDING SITE FOR RESIDUE SO4 A2164
06AC6SOFTWAREARG B:977 , HIS B:979 , ARG B:980 , LYS B:1067 , GLN B:1070 , HOH B:2029 , HOH B:2031 , HOH B:2075 , HOH B:2101BINDING SITE FOR RESIDUE SO4 B2164
07AC7SOFTWAREASN A:990 , ARG A:991 , PRO A:1160 , GLU A:1161 , HOH A:2045 , HOH A:2048BINDING SITE FOR RESIDUE SO4 A2165
08AC8SOFTWAREASN B:990 , ARG B:991 , PRO B:1160 , GLU B:1161 , HOH B:2037BINDING SITE FOR RESIDUE SO4 B2165
09AC9SOFTWAREARG A:1128 , PRO A:1129 , SER A:1130 , VAL A:1131 , ASN A:1132 , GLY A:1133BINDING SITE FOR RESIDUE GOL A2166
10BC1SOFTWAREARG A:977 , GLU A:978 , HIS A:979 , GLY A:983 , GLY A:987 , ILE A:988 , PHE A:989 , HOH A:2044BINDING SITE FOR RESIDUE GOL A2167
11BC2SOFTWAREVAL B:976 , ARG B:977 , GLU B:978 , HIS B:979 , GLY B:983 , GLY B:987 , ILE B:988 , PHE B:989 , HOH B:2036BINDING SITE FOR RESIDUE GOL B2166

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UVU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UVU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UVU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UVU)

(-) Exons   (0, 0)

(no "Exon" information available for 4UVU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eeeeee..........eeeeee........eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uvu A  952 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRPE 1161
                                   961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111||    1123      1133      1143      1153        
                                                                                                                                                                                         1112|                                              
                                                                                                                                                                                          1115                                              


Chain B from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eeeeee............eeeeee........eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4uvu B  952 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRPE 1161
                                   961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UVU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UVU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UVU)

(-) Gene Ontology  (29, 29)

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  4uvu
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNKS2_HUMAN | Q9H2K2: 2y0i 3kr7 3kr8 3mhj 3mhk 3p0n 3p0p 3p0q 3twq 3twr 3tws 3twt 3twu 3twv 3tww 3twx 3u9h 3u9y 3ua9 3w51 4avu 4avw 4bfp 4bj9 4bjb 4bjc 4bs4 4bu3 4bu5 4bu6 4bu7 4bu8 4bu9 4bua 4bud 4bue 4buf 4bui 4bus 4but 4buu 4buv 4buw 4bux 4buy 4hki 4hkk 4hkn 4hl5 4hlf 4hlg 4hlh 4hlk 4hlm 4hmh 4hyf 4iue 4j1z 4j21 4j22 4j3l 4j3m 4kzl 4kzq 4kzu 4l09 4l0b 4l0i 4l0s 4l0t 4l0v 4l10 4l2f 4l2g 4l2k 4l31 4l32 4l33 4l34 4m7b 4pml 4pnl 4pnm 4pnn 4pnq 4pnr 4pns 4pnt 4tju 4tjw 4tjy 4tk0 4tk5 4tkf 4tkg 4tki 4ufu 4ufy 4uhg 4ui3 4ui4 4ui5 4ui6 4ui7 4ui8 4uvl 4uvn 4uvo 4uvp 4uvs 4uvt 4uvv 4uvw 4uvx 4uvy 4uvz 4ux4 4w5i 4z68 5adq 5adr 5ads 5adt 5aeh 5aku 5akw 5al1 5al2 5al3 5al4 5al5 5bxo 5bxu 5c5p 5c5q 5c5r 5dcz 5fpf 5fpg 5jrt

(-) Related Entries Specified in the PDB File

4uvl CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 5-AMINO-1,2-DIHYDROISOQUINOLIN-1-ONE
4uvn CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 5-AMINO-3-(4-CHLOROPHENYL)-1,2-DIHYDROISOQUINOLIN-1 -ONE
4uvo CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 5-AMINO-3-(4-METHOXYPHENYL)-1,2-DIHYDROISOQUINOLIN-1 -ONE
4uvp CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 5-AMINO-3-ETHYL-1,2-DIHYDROISOQUINOLIN-1-ONE
4uvs CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 5-AMINO-3-PENTYL-1,2-DIHYDROISOQUINOLIN-1-ONE
4uvt CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 5-AMINO-4-METHYL-1,2-DIHYDROISOQUINOLIN-1-ONE
4uvv CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 3-(4-CHLOROPHENYL)-5-METHYL-1,2-DIHYDROISOQUINOLIN-1 -ONE
4uvw CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 4,5-DIMETHYL-3-PHENYL-1,2-DIHYDROISOQUINOLIN-1-ONE
4uvx CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 3-(4-CHLOROPHENYL)-5-FLUORO-1,2-DIHYDROISOQUINOLIN-1 -ONE
4uvy CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 3-(4-CHLOROPHENYL)-5-METHOXY-1,2- DIHYDROISOQUINOLIN- 1-ONE
4uvz CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 5-AMINO-3-PHENYL-1,2-DIHYDROISOQUINOLIN-1-ONE