4UEW - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF H2-TREATED ANAEROBICALLY PURIFIED D. FRUCTOSOVORANS NIFE-HYDROGENASE

Authors :   A. Volbeda, L. Martin, P. -P. Liebgott, J. C. Fontecilla-Camps

Date :   20 Dec 14 (Deposition) - 25 Mar 15 (Release) - 22 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.08

Chains :   Asym. Unit : A,B,C,Q,R,S
Biol. Unit 1: B,R  (1x)
Biol. Unit 2: C,S  (1x)
Biol. Unit 3: A,Q  (1x)

Keywords :   Oxidoreductase, Nife-Hydrogenase, Ni-Sib State, Ni-C State (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Volbeda, L. Martin, P. -P. Liebgott, A. L. De Lacey, J. C. Fontecilla-Camps
[Nife]-Hydrogenases Revisited: Nickel-Carboxamido Bond Formation In A Variant With Accrued O2-Tolerance And A Tentative Re-Interpretation Of Ni-Si States.
Metallomics V. 7 710 2015
PubMed-ID: 25780984 | Reference-DOI: 10.1039/C4MT00309H

Molecule 1 - PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT
	Chains	:	A, B, C
	EC Number	:	1.12.2.1
	Organism Scientific	:	DESULFOVIBRIO FRUCTOSIVORANS JJ
	Organism Taxid	:	596151
	Synonym	:	NIFE HYDROGENLYASE SMALL CHAIN, NIFE-HYDROGENASE SMALL SUBUNIT

Molecule 2 - PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT
	Chains	:	Q, R, S
	EC Number	:	1.12.2.1
	Organism Scientific	:	DESULFOVIBRIO FRUCTOSOVORANS JJ
	Organism Taxid	:	596151
	Synonym	:	NIFE HYDROGENLYASE LARGE CHAIN, NIFE-HYDROGENASE LARGE SUBUNIT

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	Q	R	S
Biological Unit 1 (1x)	:		B			R
Biological Unit 2 (1x)	:			C			S
Biological Unit 3 (1x)	:	A			Q

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 35)

No.	Name	Count	Type	Full Name
1	CSO	3	Mod. Amino Acid	S-HYDROXYCYSTEINE
2	F3S	3	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	3	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	14	Ligand/Ion	GLYCEROL
5	MG	3	Ligand/Ion	MAGNESIUM ION
6	NI	3	Ligand/Ion	NICKEL (II) ION
7	SF4	6	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 1 (5, 11)

No.	Name	Count	Type	Full Name
1	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
2	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	6	Ligand/Ion	GLYCEROL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	NI	-1	Ligand/Ion	NICKEL (II) ION
7	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 2 (5, 6)

No.	Name	Count	Type	Full Name
1	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
2	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	1	Ligand/Ion	GLYCEROL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	NI	-1	Ligand/Ion	NICKEL (II) ION
7	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 3 (5, 12)

No.	Name	Count	Type	Full Name
1	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
2	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	7	Ligand/Ion	GLYCEROL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	NI	-1	Ligand/Ion	NICKEL (II) ION
7	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:184 , CYS A:187 , ARG A:189 , LEU A:190 , CYS A:212 , LEU A:213 , CYS A:218 , PRO A:221	BINDING SITE FOR RESIDUE SF4 A1265
02	AC2	SOFTWARE	ASN A:225 , CYS A:227 , PHE A:232 , TRP A:237 , CYS A:245 , LEU A:246 , CYS A:248 , LYS Q:225 , GLN Q:230	BINDING SITE FOR RESIDUE F3S A1266
03	AC3	SOFTWARE	GLU A:16 , CYS A:17 , CYS A:20 , THR A:113 , CYS A:114 , GLY A:146 , CYS A:147 , PRO A:148 , ARG Q:70	BINDING SITE FOR RESIDUE SF4 A1267
04	AC4	SOFTWARE	ASP A:168 , LEU A:169 , LYS A:176 , GOL A:1272 , HOH A:2309	BINDING SITE FOR RESIDUE GOL A1271
05	AC5	SOFTWARE	LYS A:140 , LEU A:169 , ASP A:170 , GLU A:171 , GOL A:1271 , HOH A:2204 , HOH A:2308	BINDING SITE FOR RESIDUE GOL A1272
06	AC6	SOFTWARE	ARG A:6 , LEU A:37 , HOH A:2310 , ALA Q:169 , PHE Q:170	BINDING SITE FOR RESIDUE GOL A1273
07	AC7	SOFTWARE	HIS B:184 , CYS B:187 , ARG B:189 , LEU B:190 , CYS B:212 , LEU B:213 , CYS B:218 , PRO B:221	BINDING SITE FOR RESIDUE SF4 B1265
08	AC8	SOFTWARE	ASN B:225 , CYS B:227 , PHE B:232 , TRP B:237 , CYS B:245 , LEU B:246 , CYS B:248 , LYS R:225 , GLN R:230	BINDING SITE FOR RESIDUE F3S B1266
09	AC9	SOFTWARE	GLU B:16 , CYS B:17 , CYS B:20 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG R:70 , HIS R:228	BINDING SITE FOR RESIDUE SF4 B1267
10	BC1	SOFTWARE	HIS C:184 , CYS C:187 , ARG C:189 , LEU C:190 , CYS C:212 , LEU C:213 , CYS C:218 , PRO C:221	BINDING SITE FOR RESIDUE SF4 C1265
11	BC2	SOFTWARE	THR C:223 , ASN C:225 , CYS C:227 , PHE C:232 , TRP C:237 , CYS C:245 , LEU C:246 , CYS C:248 , LYS S:225 , GLN S:230	BINDING SITE FOR RESIDUE F3S C1266
12	BC3	SOFTWARE	GLU C:16 , CYS C:17 , GLY C:19 , CYS C:20 , GLY C:112 , THR C:113 , CYS C:114 , GLY C:146 , CYS C:147 , PRO C:148 , ARG S:70 , HIS S:228	BINDING SITE FOR RESIDUE SF4 C1267
13	BC4	SOFTWARE	CYS Q:75 , VAL Q:78 , HIS Q:79 , ALA Q:474 , PRO Q:475 , ARG Q:476 , LEU Q:479 , VAL Q:497 , PRO Q:498 , SER Q:499 , CSO Q:543 , CYS Q:546 , NI Q:1551	BINDING SITE FOR RESIDUE FCO Q1550
14	BC5	SOFTWARE	CYS Q:72 , CYS Q:75 , CSO Q:543 , CYS Q:546 , FCO Q:1550	BINDING SITE FOR RESIDUE NI Q1551
15	BC6	SOFTWARE	GLU Q:53 , LEU Q:495 , HIS Q:549 , HOH Q:2046 , HOH Q:2047 , HOH Q:2283	BINDING SITE FOR RESIDUE MG Q1553
16	BC7	SOFTWARE	ARG Q:100 , ASN Q:104 , PHE Q:295 , ALA Q:296 , THR Q:297 , GLU Q:445 , HOH Q:2104 , HOH Q:2404	BINDING SITE FOR RESIDUE GOL Q1561
17	BC8	SOFTWARE	ALA A:55 , PHE C:198 , HOH C:2157 , HOH C:2177 , ASN Q:181 , ALA Q:182 , TYR Q:183 , LEU Q:185 , ARG Q:529	BINDING SITE FOR RESIDUE GOL Q1562
18	BC9	SOFTWARE	GLY Q:281 , GLY Q:282 , ILE Q:283 , GLY Q:284 , GLY Q:285 , ARG Q:319 , THR Q:416 , HIS Q:419 , HOH Q:2266 , HOH Q:2341	BINDING SITE FOR RESIDUE GOL Q1563
19	CC1	SOFTWARE	LYS Q:245 , LYS Q:337 , TYR Q:338 , ASP Q:366 , HOH Q:2405	BINDING SITE FOR RESIDUE GOL Q1564
20	CC2	SOFTWARE	CYS R:75 , VAL R:78 , HIS R:79 , ALA R:474 , PRO R:475 , ARG R:476 , LEU R:479 , VAL R:497 , PRO R:498 , SER R:499 , CSO R:543 , CYS R:546 , NI R:1551	BINDING SITE FOR RESIDUE FCO R1550
21	CC3	SOFTWARE	CYS R:72 , CYS R:75 , CSO R:543 , CYS R:546 , FCO R:1550	BINDING SITE FOR RESIDUE NI R1551
22	CC4	SOFTWARE	GLU R:53 , LEU R:495 , HIS R:549 , HOH R:2049 , HOH R:2050 , HOH R:2240	BINDING SITE FOR RESIDUE MG R1553
23	CC5	SOFTWARE	ALA B:55 , ASN R:181 , ALA R:182 , TYR R:183 , LEU R:185 , ARG R:529 , HOH R:2340	BINDING SITE FOR RESIDUE GOL R1561
24	CC6	SOFTWARE	LEU B:137 , LYS R:410 , HOH R:2299	BINDING SITE FOR RESIDUE GOL R1562
25	CC7	SOFTWARE	ARG R:100 , ASN R:104 , PHE R:295 , ALA R:296 , THR R:297 , GLN R:310 , GLU R:445 , HOH R:2089 , HOH R:2216	BINDING SITE FOR RESIDUE GOL R1563
26	CC8	SOFTWARE	GLY R:281 , GLY R:282 , ILE R:283 , GLY R:284 , GLY R:285 , ARG R:319 , HIS R:419 , HOH R:2194 , HOH R:2195 , HOH R:2228	BINDING SITE FOR RESIDUE GOL R1564
27	CC9	SOFTWARE	THR R:286 , SER R:287 , ASN R:288 , ALA R:380 , PRO R:514 , HOH R:2197 , HOH R:2333	BINDING SITE FOR RESIDUE GOL R1565
28	DC1	SOFTWARE	ARG R:152 , PRO R:153 , SER R:156 , HOH R:2115 , HOH R:2121 , HOH R:2341 , HOH R:2342 , ALA S:451	BINDING SITE FOR RESIDUE GOL R1566
29	DC2	SOFTWARE	CYS S:75 , VAL S:78 , HIS S:79 , ALA S:474 , PRO S:475 , ARG S:476 , LEU S:479 , VAL S:497 , PRO S:498 , SER S:499 , CSO S:543 , CYS S:546 , NI S:1551	BINDING SITE FOR RESIDUE FCO S1550
30	DC3	SOFTWARE	CYS S:72 , CYS S:75 , CSO S:543 , CYS S:546 , FCO S:1550	BINDING SITE FOR RESIDUE NI S1551
31	DC4	SOFTWARE	GLU S:53 , LEU S:495 , HIS S:549 , HOH S:2021 , HOH S:2022 , HOH S:2166	BINDING SITE FOR RESIDUE MG S1553
32	DC5	SOFTWARE	ARG S:100 , ASN S:104 , PHE S:295 , ALA S:296 , THR S:297 , GLU S:445 , HOH S:2153 , HOH S:2236	BINDING SITE FOR RESIDUE GOL S1561

Asymmetric Unit

No.	Residues
1	Q:259	-	Q:436
2	R:259	-	R:436
3	S:259	-	S:436

Asymmetric Unit

No.	Residues
1	Lys A:29	-	Pro A:30
2	Lys A:124	-	Pro A:125
3	Cys A:147	-	Pro A:148
4	Thr A:258	-	Pro A:259
5	Lys B:29	-	Pro B:30
6	Lys B:124	-	Pro B:125
7	Cys B:147	-	Pro B:148
8	Thr B:258	-	Pro B:259
9	Lys C:29	-	Pro C:30
10	Lys C:124	-	Pro C:125
11	Cys C:147	-	Pro C:148
12	Thr C:258	-	Pro C:259
13	Asp Q:19	-	Pro Q:20
14	Asn Q:226	-	Pro Q:227
15	Asp R:19	-	Pro R:20
16	Asn R:226	-	Pro R:227
17	Asp S:19	-	Pro S:20
18	Asn S:226	-	Pro S:227

(no "SAP(SNP)/Variant" information available for 4UEW)

(no "PROSITE Motif" information available for 4UEW)

(no "Exon" information available for 4UEW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uew A   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uew B   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain C from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhh.....hhhhhhhhh.eeeee.......hhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uew C   5 HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain Q from PDB  Type:PROTEIN  Length:544
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uew Q   6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPcIACGVH 549
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   543-CSO

Chain R from PDB  Type:PROTEIN  Length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uew R   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPcIACGVH 549
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    543-CSO

Chain S from PDB  Type:PROTEIN  Length:544
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uew S   6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPcIACGVH 549
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   543-CSO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UEW)

(no "CATH Domain" information available for 4UEW)

(no "Pfam Domain" information available for 4UEW)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		CSO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		F3S	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FCO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
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	Cis Peptide Bonds
		Asn Q:226 - Pro Q:227	[ RasMol ]
		Asn R:226 - Pro R:227	[ RasMol ]
		Asn S:226 - Pro S:227	[ RasMol ]
		Asp Q:19 - Pro Q:20	[ RasMol ]
		Asp R:19 - Pro R:20	[ RasMol ]
		Asp S:19 - Pro S:20	[ RasMol ]
		Cys A:147 - Pro A:148	[ RasMol ]
		Cys B:147 - Pro B:148	[ RasMol ]
		Cys C:147 - Pro C:148	[ RasMol ]
		Lys A:124 - Pro A:125	[ RasMol ]
		Lys A:29 - Pro A:30	[ RasMol ]
		Lys B:124 - Pro B:125	[ RasMol ]
		Lys B:29 - Pro B:30	[ RasMol ]
		Lys C:124 - Pro C:125	[ RasMol ]
		Lys C:29 - Pro C:30	[ RasMol ]
		Thr A:258 - Pro A:259	[ RasMol ]
		Thr B:258 - Pro B:259	[ RasMol ]
		Thr C:258 - Pro C:259	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
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Access by PDB/NDB ID
	4uew
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	E1K247_DESFR \| E1K247
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	E1K248_DESFR \| E1K248
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	PHNL_DESFR \| P18188
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	PHNS_DESFR \| P18187
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.12.2.1
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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Access by UniProt ID/Accession number
	E1K247_DESFR \| E1K247
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	E1K248_DESFR \| E1K248
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PHNL_DESFR \| P18188
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PHNS_DESFR \| P18187
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	E1K247_DESFR \| E1K247	:	4ue2 4ue6 4upv 4uql 4urh
	E1K248_DESFR \| E1K248	:	4ue2 4ue6 4upv 4uql 4urh
	PHNL_DESFR \| P18188	:	1frf 1yqw 1yrq 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4upe 4upv 4uql 4uqp 4urh
	PHNS_DESFR \| P18187	:	1frf 1yqw 1yrq 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4upe 4upv 4uql 4uqp 4urh
UniProtKB/TrEMBL
	E1K247_DESFR \| E1K247	:	4ucq 4ucw 4ud2 4ud6 4ueq
	E1K248_DESFR \| E1K248	:	4ucq 4ucw 4ud2 4ud6 4ueq

4ue2	STRUCTURE OF AIR-TREATED ANAEROBICALLY PURIFIED D. FRUCTOSOVORANS NIFE-HYDROGENASE
4ue6	STRUCTURE OF METHYLENE BLUE-TREATED ANAEROBICALLY PURIFIED D. FRUCTOSOVORANS NIFE-HYDROGENASE
4ueq	STRUCTURE OF THE V74C LARGE SUBUNIT MUTANT OF D. FRUCTOSOVORANS NIFE-HYDROGENASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 35)

Sites (32, 32)

SS Bonds (3, 3)

Cis Peptide Bonds (18, 18)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 31)

Visualization

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Databases and Analysis Tools

Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File