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(-) Description

Title :  CRYSTAL STRUCTURE OF CONJOINT PYROCOCCUS FURIOSUS L-ASPARAGINASE WITH CITRATE
 
Authors :  P. Sharma, R. Tomar, S. Singh, S. P. S. Yadav, Ashish, B. Kundu
Date :  09 Sep 14  (Deposition) - 10 Dec 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Tomar, P. Sharma, A. Srivastava, S. Bansal, Ashish, B. Kundu
Structural And Functional Insights Into An Archaeal L-Asparaginase Obtained Through The Linker-Less Assembly Of Constituent Domains
Acta Crystallogr. , Sect. D V. 70 3187 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004714023414

(-) Compounds

Molecule 1 - L-ASPARAGINASE
    Chains: A
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-182
    Gene: PF2047, PH0066
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497
 
Molecule 2 - L-ASPARAGINASE
    Chains: B
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 202-326
    Gene: PF2047, PH0066
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2GOL4Ligand/IonGLYCEROL
3IPA2Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:10 , THR A:11 , ASP A:51 , SER A:52 , THR A:53 , GLY A:82 , THR A:83 , ASP A:84 , SER A:109 , GOL A:204 , HOH A:322 , HOH A:339 , HOH A:356BINDING SITE FOR RESIDUE FLC A 201
2AC2SOFTWAREGLU A:22 , LEU A:25 , SER A:26 , ASN A:49 , HOH A:314 , HOH A:324 , HOH A:340 , TYR B:239BINDING SITE FOR RESIDUE GOL A 202
3AC3SOFTWARETHR A:132 , SER A:133 , ILE A:170 , ILE A:171 , VAL A:181 , ASN A:182BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREASP A:84 , MET A:110 , LYS A:154 , THR A:157 , FLC A:201 , GLY B:233 , ALA B:234 , ARG B:272 , TYR B:273BINDING SITE FOR RESIDUE GOL A 204
5AC5SOFTWAREPHE A:44 , ASN A:70 , LYS A:73 , TYR A:74BINDING SITE FOR RESIDUE GOL A 205
6AC6SOFTWAREILE A:111 , MET A:158 , ARG A:160 , ARG B:272BINDING SITE FOR RESIDUE IPA A 206
7AC7SOFTWAREHOH A:341 , HOH A:360 , LYS B:274 , ARG B:277 , ARG B:281BINDING SITE FOR RESIDUE FLC B 401
8AC8SOFTWARESER B:212 , ASP B:214 , LEU B:222 , TYR B:224BINDING SITE FOR RESIDUE IPA B 402

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:39 -A:42

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RA9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RA9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RA9)

(-) Exons   (0, 0)

(no "Exon" information available for 4RA9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eee.....eee.hhhhhhhhh.......eeeeeeeeehhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhh....eeeeee..eeee...eee........eee......eeee..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ra9 A   1 MKILLIGMGGTIASVKGENGYEASLSVKEVLDIAGIKDCEDCDFLDLKNVDSTLIQPEDWVDLAETLYKNVKKYDGIIVTHGTDTLAYTSSMISFMLRNPPIPIVFTGSMIPATEENSDAPLNLQTAIKFATSGIRGVYVAFNGKVMLGVRTSKVRTMSRDAFESINYPIIAELRGEDLVVN 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhhh...eeeeee...........hhhhhhhhhh....eeeee...........hhhhhhhhhh..ee....hhhhhhhhhhhhhh...hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ra9 B 199 HMAVLVIKLIPGLSGDIFRAAVELGYRGIVIEGYGAGGIPYRGSDLLQTIEELSKEIPIVMTTQAMYDGVDLTRYKVGRLALRAGVIPAGDMTKEATVTKLMWILGHTNNVEEIKVLMRKNLVGELRD 326
                                   208       218       228       238       248       258       268       278       288       298       308       318
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RA9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RA9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RA9)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q8TZE8_PYRFU | Q8TZE8: 5b5u 5b74
UniProtKB/TrEMBL
        Q8TZE8_PYRFU | Q8TZE8: 4nje 4q0m 4ra6 5cbp

(-) Related Entries Specified in the PDB File

4ra6