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(-) Description

Title :  CRYSTAL STRUCTURE OF CONJOINT PYROCOCCUS FURIOSUS L-ASPARAGINASE AT 37 DEGREE C
 
Authors :  P. Sharma, S. P. Yadav, R. Tomar, B. Kundu, F. Ashish
Date :  01 Jul 15  (Deposition) - 06 Jul 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Sharma, S. P. Yadav, R. Tomar, B. Kundu, F. Ashish
Crystal Structure Of Conjoint Pyrococcus Furiosus L-Asparaginase At 37 Degree C
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - L-ASPARAGINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN, UNP RESIDUES 1-182
    Gene: PF2047, PH0066
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497
    Strain: DSM 3638
 
Molecule 2 - L-ASPARAGINASE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN UNP RESIDUES 202-326
    Gene: PF2047, PH0066
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497
    Strain: DSM 3638

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2GOL6Ligand/IonGLYCEROL
3IPA3Ligand/IonISOPROPYL ALCOHOL
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2GOL12Ligand/IonGLYCEROL
3IPA6Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:10 , THR A:11 , ASP A:51 , SER A:52 , THR A:53 , GLY A:82 , THR A:83 , ASP A:84 , SER A:109 , GOL A:206 , HOH A:304 , HOH A:329 , TYR B:273binding site for residue FLC A 201
02AC2SOFTWAREPHE A:44 , ASN A:70 , LYS A:73 , TYR A:74 , ARG B:240binding site for residue GOL A 202
03AC3SOFTWAREVAL A:71 , LYS A:72 , TYR A:74 , ASP A:75 , PRO A:101 , ILE A:102 , ASN B:319 , ARG B:325binding site for residue GOL A 203
04AC4SOFTWAREMET A:1 , ASP A:38 , CYS A:39 , GLU A:40 , ASP A:41binding site for residue IPA A 204
05AC5SOFTWARESER A:159 , ARG A:160binding site for residue IPA A 205
06AC6SOFTWAREASP A:84 , LYS A:154 , THR A:157 , FLC A:201 , HOH A:309 , GLY B:233 , ALA B:234 , ARG B:272 , TYR B:273binding site for residue GOL A 206
07AC7SOFTWARETHR A:132 , SER A:133 , GLY A:134 , ILE A:170 , ILE A:171 , VAL A:180 , VAL A:181 , ASN A:182binding site for residue GOL A 207
08AC8SOFTWARELEU A:45 , ASP A:46 , LYS A:48 , VAL A:50binding site for residue IPA A 208
09AC9SOFTWAREGLU A:22 , ALA A:23 , SER A:26 , GLU A:29 , ASN A:49 , ASP A:51binding site for residue GOL A 209
10AD1SOFTWAREVAL B:268 , ASP B:269 , LEU B:270 , THR B:271 , PRO B:286 , GLY B:288 , ARG B:317binding site for residue GOL B 401

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:39 -A:42

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CBP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CBP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CBP)

(-) Exons   (0, 0)

(no "Exon" information available for 5CBP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....eee.....eee.hhhhhhhhhh.....eeeeeeeeeehhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhh....eeeeee..eeee...eee........eee......eeee..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbp A   1 MKILLIGMGGTIASVKGENGYEASLSVKEVLDIAGIKDCEDCDFLDLKNVDSTLIQPEDWVDLAETLYKNVKKYDGIIVTHGTDTLAYTSSMISFMLRNPPIPIVFTGSMIPATEENSDAPLNLQTAIKFATSGIRGVYVAFNGKVMLGVRTSKVRTMSRDAFESINYPIIAELRGEDLVVN 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  


Chain B from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh...eeeeee...........hhhhhhhhhh....eeeee...........hhhhhhhhhh..ee....hhhhhhhhhhhhhh...hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbp B 200 MAVLVIKLIPGLSGDIFRAAVELGYRGIVIEGYGAGGIPYRGSDLLQTIEELSKEIPIVMTTQAMYDGVDLTRYKVGRLALRAGVIPAGDMTKEATVTKLMWILGHTNNVEEIKVLMRKNLVGELRD 326
                                   209       219       229       239       249       259       269       279       289       299       309       319
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CBP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CBP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CBP)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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  Q8TZE8_PYRFU | Q8TZE8
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  Q8TZE8_PYRFU | Q8TZE8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q8TZE8_PYRFU | Q8TZE8: 5b5u 5b74
UniProtKB/TrEMBL
        Q8TZE8_PYRFU | Q8TZE8: 4nje 4q0m 4ra6 4ra9

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CBP)