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(-) Description

Title :  CRYSTAL STRUCTURE OF LINKER LESS PYROCOCCUS FURIOSUS L-ASPARAGINASE
 
Authors :  P. Sharma, R. Tomar, Ashish, B. Kundu
Date :  09 Sep 14  (Deposition) - 10 Dec 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,P,Q
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  P,Q  (1x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Tomar, P. Sharma, A. Srivastava, S. Bansal, Ashish, B. Kundu
Structural And Functional Insights Into An Archaeal L-Asparaginase Obtained Through The Linker-Less Assembly Of Constituent Domains
Acta Crystallogr. , Sect. D V. 70 3187 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004714023414

(-) Compounds

Molecule 1 - L-ASPARAGINASE
    Chains: A, P
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-182
    Gene: PF2047, PH0066
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497
 
Molecule 2 - L-ASPARAGINASE
    Chains: B, Q
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 202-326
    Gene: PF2047, PH0066
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABPQ
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   PQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:26 , GLU A:29BINDING SITE FOR RESIDUE GOL A 201
2AC2SOFTWAREASP A:32 , LYS A:37 , GLU B:221 , GLU B:254BINDING SITE FOR RESIDUE GOL B 401
3AC3SOFTWARELYS P:28 , GLU P:29 , ASP P:32BINDING SITE FOR RESIDUE GOL P 201

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:39 -A:42
2P:39 -P:42

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RA6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RA6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RA6)

(-) Exons   (0, 0)

(no "Exon" information available for 4RA6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhh......hhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhh....eeeeee..eeee...eee........eee......ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ra6 A   1 MKILLIGMGGTIASVYEASLSVKEVLDIAGIKDCEDCDFLDLKNVDSTLIQPEDWVDLAETLYKNVKKYDGIIVTHGTDTLAYTSSMISFMLRNPPIPIVFTGSMIPATEENSDAPLNLQTAIKFATSGIRGVYVAFNGKVMLGVRTSKVRTMSRDAFESINYPIIAELRGEDLVVN 182
                                    10    ||  25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       
                                         15|                                                                                                                                                                 
                                          21                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhh....eeeeee...........hhhhhhhhhh....eeeee............hhhhhhh.eee....hhhhhhhhhhhhhh...hhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ra6 B 200 MAVLVIKLIPGLSGDIFRAAVELGYRGIVIEGYGAGGIPYRGSDLLQTIEELSKEIPIVMTTQAMYDGVDLTRVGRLALRAGVIPAGDMTKEATVTKLMWILGHTNNVEEIKVLMRKNLVGELRD 326
                                   209       219       229       239       249       259       269  ||   281       291       301       311       321     
                                                                                                  272|                                                   
                                                                                                   275                                                   


Chain P from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhh.......hhhhhhhhhh......eeeeeeeeehhhhhhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhh....eeeeee..eeee...eee........eee......eeee..eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ra6 P   1 MKILLIGMGGTIASVKYEASLSVKEVLDIAGIKDCEDCDFLDLKNVDSTLIQPEDWVDLAETLYKNVKKYDGIIVTHGTDTLAYTSSMISFMLRNPPIPIVFTGSMIPATEENSDAPLNLQTAIKFATSGIRGVYVAFNGKVMLGVRTSKVRTMSRDAFESINYPIIAELRGEDLVVN 182
                                    10     || 24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174        
                                          16|                                                                                                                                                                 
                                           21                                                                                                                                                                 


Chain Q from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhh....eeeeee...........hhhhhhhhhh....eeeee...........hhhhhhhhhh..ee....hhhhhhhhhhhhhh...hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ra6 Q 200 MAVLVIKLIPGLSGDIFRAAVELGYRGIVIEGYGAGGIPYRGSDLLQTIEELSKEIPIVMTTQAMYDGVDLTRYKVGRLALRAGVIPAGDMTKEATVTKLMWILGHTNNVEEIKVLMRKNLVGELRD 326
                                   209       219       229       239       249       259       269       279       289       299       309       319
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RA6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RA6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RA6)

(-) Gene Ontology  (2, 2)

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  4ra6
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  Q8TZE8_PYRFU | Q8TZE8
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  3.5.1.1
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  Q8TZE8_PYRFU | Q8TZE8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q8TZE8_PYRFU | Q8TZE8: 5b5u 5b74
UniProtKB/TrEMBL
        Q8TZE8_PYRFU | Q8TZE8: 4nje 4q0m 4ra9 5cbp

(-) Related Entries Specified in the PDB File

4ra9