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(-) Description

Title :  CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS L-ASPARAGINASE
 
Authors :  P. Sharma, R. Tomar, S. Singh, S. P. S. Yadav, Ashish, B. Kundu
Date :  02 Apr 14  (Deposition) - 10 Dec 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Tomar, P. Sharma, A. Srivastava, S. Bansal, Ashish, B. Kundu
Structural And Functional Insights Into An Archaeal L-Asparaginase Obtained Through The Linker-Less Assembly Of Constituent Domains
Acta Crystallogr. , Sect. D V. 70 3187 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004714023414

(-) Compounds

Molecule 1 - L-ASPARAGINASE
    Chains: A
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBR322 ORIGIN
    Expression System Taxid: 562
    Expression System Vector: PET14B
    Expression System Vector Type: PLASMID
    Gene: PF2047, PH0066
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: DSM 3638

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
14CS1Ligand/Ion(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLICACID
2GOL3Ligand/IonGLYCEROL
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
14CS2Ligand/Ion(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLICACID
2GOL6Ligand/IonGLYCEROL
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:10 , THR A:11 , ASP A:51 , SER A:52 , GLY A:82 , THR A:83 , ASP A:84 , TYR A:273 , HOH A:524 , HOH A:552 , HOH A:578 , HOH A:590BINDING SITE FOR RESIDUE PO4 A 401
2AC2SOFTWAREPRO A:200 , LYS A:201 , VAL A:202 , ILE A:208 , PRO A:209 , GLY A:210 , LEU A:211 , SER A:212 , TYR A:224BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWARETYR A:168 , LYS A:186 , ASN A:319 , GLY A:322BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREGLY A:134 , ILE A:135 , ARG A:136 , ILE A:184 , PHE A:187BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWARETYR A:68 , VAL A:192 , THR A:193 , LEU A:194 , ASN A:307 , ASN A:308 , HOH A:595BINDING SITE FOR RESIDUE 4CS A 405

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:39 -A:42

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q0M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q0M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q0M)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q0M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee....eeee..eeee..hhhhhhhhh.......eeeeeeeeehhhhhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhee....eeeee...........hhhhhhhhhhhhhh....eeeeee..eeee...eee........eee......eeee..eeee...........ee.......eeeee......hhhhhhhhhh...eeeeee...........hhhhhhhhhh....eeeee...........hhhhhhhhhh..ee....hhhhhhhhhhhhh....hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q0m A   0 MMKILLIGMGGTIASVKGENGYEASLSVKEVLDIAGIKDCEDCDFLDLKNVDSTLIQPEDWVDLAETLYKNVKKYDGIIVTHGTDTLAYTSSMISFMLRNPPIPIVFTGSMIPATEENSDAPLNLQTAIKFATSGIRGVYVAFNGKVMLGVRTSKVRTMSRDAFESINYPIIAELRGEDLVVNFIPKFNNGEVTLDLRHDPKVLVIKLIPGLSGDIFRAAVELGYRGIVIEGYGAGGIPYRGSDLLQTIEELSKEIPIVMTTQAMYDGVDLTRYKVGRLALRAGVIPAGDMTKEATVTKLMWILGHTNNVEEIKVLMRKNLVGELRD 326
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q0M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q0M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q0M)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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  4q0m
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  Q8TZE8_PYRFU | Q8TZE8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q8TZE8_PYRFU | Q8TZE8: 5b5u 5b74
UniProtKB/TrEMBL
        Q8TZE8_PYRFU | Q8TZE8: 4nje 4ra6 4ra9 5cbp

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Q0M)