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(-) Description

Title :  CASPASE-3 F55W
 
Authors :  C. Cade, P. D. Swartz, S. H. Mackenzie, A. C. Clark
Date :  10 Jul 14  (Deposition) - 05 Nov 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,C,F,G
Keywords :  Allosteric Network, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Cade, P. Swartz, S. H. Mackenzie, A. C. Clark
Modifying Caspase-3 Activity By Altering Allosteric Networks.
Biochemistry V. 53 7582 2014
PubMed-ID: 25343534  |  Reference-DOI: 10.1021/BI500874K

(-) Compounds

Molecule 1 - CASPASE-3
    ChainsA, C
    EC Number3.4.22.56
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCASP3, CPP32
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCASP-3, APOPAIN, CYSTEINE PROTEASE CPP32, CPP-32, PROTEIN YAMA, SREBP CLEAVAGE ACTIVITY 1, SCA-1, CASPASE-3 SUBUNIT P17, CASPASE-3 SUBUNIT P12
 
Molecule 2 - ACE-ASP-GLU-VAL-ASP-CHLOROMETHYLKETONE INHIBITOR
    ChainsG, F
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ACFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
10QE2Mod. Amino AcidCHLOROMETHANE
2ACE2Mod. Amino AcidACETYL GROUP
3AZI3Ligand/IonAZIDE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:137 , THR A:140 , ASN A:141 , GLU A:190 , PHE A:193 , TYR A:195BINDING SITE FOR RESIDUE AZI A 301
2AC2SOFTWAREASN A:208 , ASP A:211 , GLN A:217 , HOH A:465 , HOH F:102BINDING SITE FOR RESIDUE AZI A 302
3AC3SOFTWARELYS A:53 , GLY A:66 , THR A:67 , ASP A:68 , VAL A:69BINDING SITE FOR RESIDUE AZI A 303
4AC4SOFTWAREARG C:64 , HIS C:121 , GLY C:122 , GLN C:161 , CYS C:163 , TYR C:204 , SER C:205 , TRP C:206 , ARG C:207 , ASN C:208 , SER C:209 , TRP C:214 , SER C:249 , PHE C:250 , HOH C:342 , HOH G:104 , HOH G:105 , HOH G:106BINDING SITE FOR CHAIN G OF ACE-ASP-GLU-VAL-ASP- CHLOROMETHYLKETONE INHIBITOR
5AC5SOFTWAREARG A:64 , HIS A:121 , GLY A:122 , GLN A:161 , CYS A:163 , TYR A:204 , SER A:205 , TRP A:206 , ARG A:207 , ASN A:208 , SER A:209 , TRP A:214 , SER A:249 , PHE A:250 , HOH A:462 , HOH F:101 , HOH F:102 , HOH F:103BINDING SITE FOR CHAIN F OF ACE-ASP-GLU-VAL-ASP- CHLOROMETHYLKETONE INHIBITOR

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QUL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QUL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QUL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QUL)

(-) Exons   (0, 0)

(no "Exon" information available for 4QUL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeee...........hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhh.....eeeeeeeee..ee..eeee..eeeehhhhhhhhh...hhhhh...eeeeee....................eeeee........eee...eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhh......eeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qul A  34 DNSYKMDYPEMGLCIIINNKNWTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIEHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFYH 277
                                    43        53 ||     66        76        86        96       106       116       126       136       146       156       166      |187       197       207       217       227       237       247       257       267       277
                                                55|                                                                                                               173|                                                                                            
                                                 59                                                                                                                185                                                                                            

Chain C from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhh.....eeeeeeeee..ee..eeee..eeeehhhhhhh.....hhhhh...eeeeee...eee..............eeeee....ee..eee...eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhh......eeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qul C  29 SDNSYKMDYPEMGLCIIINNKNWHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIEHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFYHL 278
                            ||      42        52        62        72        82        92       102       112       122       132       142       152       162       172||     193       203       213       223       233       243       253       263       273     
                           29|                                                                                                                                        173|                                                                                             
                            34                                                                                                                                         185                                                                                             

Chain F from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ..ee.. Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4qul F   1 xDEVDx   6
                            |    |
                            1-ACE|
                                 6-0QE

Chain G from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ..ee.. Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4qul G   1 xDEVDx   6
                            |    |
                            |    |
                            1-ACE|
                                 6-0QE

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QUL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QUL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QUL)

(-) Gene Ontology  (78, 78)

Asymmetric/Biological Unit(hide GO term definitions)

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  4qul
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP3_HUMAN | P425741cp3 1gfw 1i3o 1nme 1nmq 1nms 1pau 1qx3 1re1 1rhj 1rhk 1rhm 1rhq 1rhr 1rhu 2c1e 2c2k 2c2m 2c2o 2cdr 2cjx 2cjy 2cnk 2cnl 2cnn 2cno 2dko 2h5i 2h5j 2h65 2j30 2j31 2j32 2j33 2xyg 2xyh 2xyp 2xzd 2xzt 2y0b 3deh 3dei 3dej 3dek 3edq 3gjq 3gjr 3gjs 3gjt 3h0e 3itn 3kjf 3pcx 3pd0 3pd1 4dcj 4dco 4dcp 4eha 4ehd 4ehf 4ehh 4ehk 4ehl 4ehn 4jje 4jqy 4jqz 4jr0 4pry 4ps0 4qtx 4qty 4qu0 4qu5 4qu8 4qu9 4qua 4qub 4qud 4que 4qug 4quh 4qui 4quj 5i9b 5i9t 5iab 5iae 5iag 5iaj 5iak 5ian 5iar 5ias 5ibc 5ibp 5ibr 5ic4

(-) Related Entries Specified in the PDB File

4qtx 4qu0 4qu5 4qu8 4qu9 4qua 4qub 4qud 4que 4qug 4quh 4qui 4quj 4qul