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(-) Description

Title :  CASPASE-8 SPECIFIC UNNATURAL AMINO ACID PEPTIDES
 
Authors :  D. W. Wolan, G. E. Gonzalez-Paez, C. J. Vickers
Date :  06 Mar 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protease, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Vickers, G. E. Gonzalez-Paez, K. M. Litwin, J. C. Umotoy, E. A. Coutsias, D. W. Wolan
Selective Inhibition Of Initiator Versus Executioner Caspases Using Small Peptides Containing Unnatural Amino Acids.
Acs Chem. Biol. V. 9 2194 2014
PubMed-ID: 25079698  |  Reference-DOI: 10.1021/CB5004256

(-) Compounds

Molecule 1 - CASPASE-3
    Chains: A
    EC Number: 3.4.22.56
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Strain: BL21DE3PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CASP3, CASPASE-3 CPP32, CPP32
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CASP-3, APOPAIN, CYSTEINE PROTEASE CPP32, CPP-32, PROTEIN YAMA, SREBP CLEAVAGE ACTIVITY 1, SCA-1, CASPASE-3 SUBUNIT P17, CASPASE-3 SUBUNIT P12
 
Molecule 2 - AC-LETD-CHO
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ASA1Mod. Amino AcidASPARTIC ALDEHYDE

(-) Sites  (0, 0)

(no "Site" information available for 4PRY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PRY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PRY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PRY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PRY)

(-) Exons   (0, 0)

(no "Exon" information available for 4PRY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhh.....eeeeeeeee..ee..eeee..eeeehhhhhhh.....hhhhh...eeeeee.............................eeeee........eee...eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhh......eeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pry A  29 SGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFYHQL 279
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168     ||180       190       200       210       220       230       240       250       260       270         
                                                                                                                                                                           174|                                                                                                      
                                                                                                                                                                            177                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4pry B 401 xLETd 405
                            |   |
                          401-ACE
                              405-ASA
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PRY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PRY)

(-) Gene Ontology  (78, 78)

Asymmetric/Biological Unit(hide GO term definitions)

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  4pry
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  CASP3_HUMAN | P42574
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP3_HUMAN | P42574: 1cp3 1gfw 1i3o 1nme 1nmq 1nms 1pau 1qx3 1re1 1rhj 1rhk 1rhm 1rhq 1rhr 1rhu 2c1e 2c2k 2c2m 2c2o 2cdr 2cjx 2cjy 2cnk 2cnl 2cnn 2cno 2dko 2h5i 2h5j 2h65 2j30 2j31 2j32 2j33 2xyg 2xyh 2xyp 2xzd 2xzt 2y0b 3deh 3dei 3dej 3dek 3edq 3gjq 3gjr 3gjs 3gjt 3h0e 3itn 3kjf 3pcx 3pd0 3pd1 4dcj 4dco 4dcp 4eha 4ehd 4ehf 4ehh 4ehk 4ehl 4ehn 4jje 4jqy 4jqz 4jr0 4ps0 4qtx 4qty 4qu0 4qu5 4qu8 4qu9 4qua 4qub 4qud 4que 4qug 4quh 4qui 4quj 4qul 5i9b 5i9t 5iab 5iae 5iag 5iaj 5iak 5ian 5iar 5ias 5ibc 5ibp 5ibr 5ic4

(-) Related Entries Specified in the PDB File

4jj7 CASPASE-8 SPECIFIC UNNATURAL AMINO ACID PEPTIDES
4jj8 CASPASE-7 SPECIFIC UNNATURAL AMINO ACID PEPTIDES
4jje CASPASE-3 SPECIFIC UNNATURAL AMINO ACID PEPTIDES
4prz
4ps0
4ps1