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(-) Description

Title :  STRUCTURE OF HUMAN HASPIN (GSG2) IN COMPLEX WITH SCH772984 REVEALING THE FIRST TYPE-I BINDING MODE
 
Authors :  A. Chaikuad, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, Structural Genomics Consortium (Sgc)
Date :  07 Jul 14  (Deposition) - 23 Jul 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Transferase, Kinase, Inhibitor, Allosteric, Structural Genomics Consortium (Sgc), Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Chaikuad, E. M C Tacconi, J. Zimmer, Y. Liang, N. S. Gray, M. Tarsounas, S. Knapp
A Unique Inhibitor Binding Site In Erk1/2 Is Associated Wit Slow Binding Kinetics.
Nat. Chem. Biol. V. 10 853 2014
PubMed-ID: 25195011  |  Reference-DOI: 10.1038/NCHEMBIO.1629

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE HASPIN
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21-R3-PRARE2
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN (465-798)
    Gene: GSG2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GERM CELL-SPECIFIC GENE 2 PROTEIN, H-HASPIN, HAPLOID GERM CELL-SPECIFIC NUCLEAR PROTEIN KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
138Z1Ligand/Ion(3R)-1-(2-OXO-2-{4-[4-(PYRIMIDIN-2-YL)PHENYL]PIPERAZIN-1-YL}ETHYL)-N-[3-(PYRIDIN-4-YL)-2H-INDAZOL-5-YL]PYRROLIDINE-3-CARBOXAMIDE
2GOL2Ligand/IonGLYCEROL
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:537 , PRO A:571 , ARG A:695 , ILE A:698 , HOH A:955 , HOH A:1259 , HOH A:1261BINDING SITE FOR RESIDUE MPD A 801
2AC2SOFTWARETYR A:667 , LYS A:672 , SER A:673 , SER A:674 , HOH A:1270 , HOH A:1356BINDING SITE FOR RESIDUE GOL A 802
3AC3SOFTWARETYR A:739 , LEU A:782 , ASN A:783 , PHE A:784BINDING SITE FOR RESIDUE GOL A 803
4AC4SOFTWAREILE A:490 , GLY A:491 , GLU A:492 , VAL A:498 , ALA A:509 , TYR A:580 , LYS A:584 , GLY A:585 , SER A:586 , ALA A:587 , GLU A:606 , GLY A:608 , GLY A:609 , GLN A:614 , LEU A:656 , HOH A:904 , HOH A:920 , HOH A:1185 , HOH A:1202BINDING SITE FOR RESIDUE 38Z A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QTC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QTC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QTC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QTC)

(-) Exons   (0, 0)

(no "Exon" information available for 4QTC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.eeeeee..eeeeeeee..eeeeeeeeee....ee..ee..hhhhhhhhhhhhhhhhhhhhh..........eeeeeeee...hhhhhhhhhhhhhhh..............eeeeeeee...ee.........hhhhhhhhhhhhhhhhhhhhhhhh......hhh.eeeee....eeeeee..eeeeee...eeeee.......eee..eee.......hhhhh...hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qtc A 469 QKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLFK 798
                                   478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QTC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QTC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QTC)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HASP_HUMAN | Q8TF76: 2vuw 2wb8 3dlz 3e7v 3f2n 3fmd 3iq7 4ouc 5htb 5htc

(-) Related Entries Specified in the PDB File

4qta 4qtb 4qtd 4qte