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(-) Description

Title :  STRUCTURE OF BETA2 ADRENOCEPTOR BOUND TO A COVALENT AGONIST AND AN ENGINEERED NANOBODY
 
Authors :  D. Weichert, A. C. Kruse, A. Manglik, C. Hiller, C. Zhang, H. Huebner, B. K. Kobilka, P. Gmeiner
Date :  10 Jun 14  (Deposition) - 23 Jul 14  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  7-Transmembrane Helices, Signal Transduction, G Proteins, Membrane, Membrane Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Weichert, A. C. Kruse, A. Manglik, C. Hiller, C. Zhang, H. Hubner, B. K. Kobilka, P. Gmeiner
Covalent Agonists For Studying G Protein-Coupled Receptor Activation.
Proc. Natl. Acad. Sci. Usa V. 111 10744 2014
PubMed-ID: 25006259  |  Reference-DOI: 10.1073/PNAS.1410415111

(-) Compounds

Molecule 1 - BETA-2 ADRENERGIC RECEPTOR
    Chains: A
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PVL1392
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Gene: E, T4TP126, ADRB2, ADRB2R, B2AR
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: ENTEROBACTERIA PHAGE T4, HOMO SAPIENS
    Organism Taxid: 10665, 9606
    Synonym: BETA-2 ADRENORECEPTOR, BETA-2 ADRENOCEPTOR
 
Molecule 2 - R9 PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET26B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: R9
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
135V1Ligand/Ion4-[(1R)-1-HYDROXY-2-({2-[3-METHOXY-4-(2-SULFANYLETHOXY)PHENYL]ETHYL}AMINO)ETHYL]BENZENE-1,2-DIOL
2NA2Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1093 , TRP A:1109 , ASP A:1113 , VAL A:1114 , CYS A:1191 , ASP A:1192 , PHE A:1193 , SER A:1203 , SER A:1207 , ASN A:1312 , TYR A:1316BINDING SITE FOR RESIDUE 35V A 1403

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:1106 -A:1191
2A:1184 -A:1190
3B:24 -B:97

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QKX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QKX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QKX)

(-) Exons   (0, 0)

(no "Exon" information available for 4QKX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh..eeeeee.....eeee..eeee...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qkx A  858 DAENLYFQGNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCL 1342
                                   867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227   || 1268      1278      1288      1298      1308      1318      1328      1338    
                                                                                                                                                                                                                                                                                                                                                                                                              1231|                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                               1263                                                                               


Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...eee....eeeeeeee......eeeeeeee......eeeeeee....eee.......eeeee.....eeeeee...hhhhheeeeeeeee.......eeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                4qkx B    3 QVQLQESGGGLVQAGGSLRLSCAASGSIFALNIMGWYRQAPGKQRELVAAIHSGGTTNYANSVKGRFTISRDNAANTVYLQMNSLKPEDTAVYYCNVKDFGAIIYDYDYWGQGTQVTVSS  122
                                    12        22        32        42        52        62        72        82        92       102       112       122
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QKX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QKX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QKX)

(-) Gene Ontology  (106, 106)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADRB2_HUMAN | P07550: 1gq4 2r4r 2r4s 2rh1 3d4s 3kj6 3ny8 3ny9 3nya 3p0g 3pds 3sn6 4gbr 4lde 4ldl 4ldo 5d5a 5d5b 5d6l 5jqh
        D9IEF7_BPT4 | D9IEF7: 4s0w 5ndd 5ndz 5t1a 5v83 5v86 5v88 5vba 5xez 5xf1
UniProtKB/TrEMBL
        D9IEF7_BPT4 | D9IEF7: 4pjz 4pk0 4pla 4u15 4u16 4uis 4xsj 4yc4 5bz6 5i0n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4QKX)