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4QI7
Biol. Unit 3
Info
Asym.Unit (530 KB)
Biol.Unit 1 (264 KB)
Biol.Unit 2 (262 KB)
Biol.Unit 3 (519 KB)
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(1)
Title
:
CELLOBIOSE DEHYDROGENASE FROM NEUROSPORA CRASSA, NCCDH
Authors
:
T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. C. Divne
Date
:
30 May 14 (Deposition) - 15 Jul 15 (Release) - 15 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Immunoglobulin-Like Beta-Sandwich (Cytochrome), Fad/Nad(P)-Binding Domain (Dehydrogenase Domain), Cellobiose Oxidizing, Electron Transfer, Lignocellulose Degradation, Cellobiose, Lpmo, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. Hallberg, C. Divne
Fungal Enzyme
To Be Published
[
close entry info
]
Hetero Components
(4, 21)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6a: PLATINUM (II) ION (PTa)
6b: PLATINUM (II) ION (PTb)
6c: PLATINUM (II) ION (PTc)
6d: PLATINUM (II) ION (PTd)
6e: PLATINUM (II) ION (PTe)
6f: PLATINUM (II) ION (PTf)
6g: PLATINUM (II) ION (PTg)
6h: PLATINUM (II) ION (PTh)
6i: PLATINUM (II) ION (PTi)
6j: PLATINUM (II) ION (PTj)
6k: PLATINUM (II) ION (PTk)
6l: PLATINUM (II) ION (PTl)
6m: PLATINUM (II) ION (PTm)
6n: PLATINUM (II) ION (PTn)
6o: PLATINUM (II) ION (PTo)
6p: PLATINUM (II) ION (PTp)
6q: PLATINUM (II) ION (PTq)
6r: PLATINUM (II) ION (PTr)
6s: PLATINUM (II) ION (PTs)
6t: PLATINUM (II) ION (PTt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PT
-1
Ligand/Ion
PLATINUM (II) ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:67 , ALA A:73 , MET A:74 , LEU A:79 , TYR A:99 , MET A:101 , PRO A:102 , TRP A:155 , VAL A:156 , LEU A:173 , SER A:174 , GLN A:175 , HIS A:176 , GLY A:348 , ARG A:352
BINDING SITE FOR RESIDUE HEM A 901
02
AC2
SOFTWARE
VAL A:235 , GLY A:236 , GLY A:237 , ALA A:239 , GLY A:240 , GLU A:259 , LYS A:260 , TRP A:295 , MET A:309 , GLY A:311 , CYS A:312 , VAL A:313 , GLY A:316 , GLY A:317 , ASN A:321 , ALA A:322 , LEU A:324 , ALA A:439 , VAL A:440 , ALA A:480 , GLY A:481 , ASN A:699 , HIS A:700 , ASP A:736 , ALA A:737 , ASN A:747 , PRO A:748 , THR A:749 , ILE A:752 , MG A:924
BINDING SITE FOR RESIDUE FAD A 902
03
AC3
SOFTWARE
ASN A:119 , THR A:121 , HIS A:122 , THR A:124
BINDING SITE FOR RESIDUE NAG A 903
04
AC4
SOFTWARE
ASN A:278 , GLY B:461 , MAN B:909
BINDING SITE FOR RESIDUE NAG A 904
05
AC5
SOFTWARE
ASN A:400
BINDING SITE FOR RESIDUE NAG A 905
06
AC6
SOFTWARE
ASN A:471 , THR A:472 , ALA A:791
BINDING SITE FOR RESIDUE NAG A 906
07
AC7
SOFTWARE
LYS A:497 , LYS A:504 , ASN A:515
BINDING SITE FOR RESIDUE NAG A 907
08
AC8
SOFTWARE
ASN A:541 , LYS A:669
BINDING SITE FOR RESIDUE NAG A 908
09
AC9
SOFTWARE
ASN A:555 , THR A:557 , ASP A:558
BINDING SITE FOR RESIDUE NAG A 909
10
BC1
SOFTWARE
THR A:222 , GLU B:275 , NAG B:904
BINDING SITE FOR RESIDUE MAN A 910
11
BC2
SOFTWARE
THR A:226
BINDING SITE FOR RESIDUE MAN A 911
12
BC3
SOFTWARE
LYS A:331
BINDING SITE FOR RESIDUE PT A 916
13
BC4
SOFTWARE
LYS A:273
BINDING SITE FOR RESIDUE PT A 917
14
BC5
SOFTWARE
LYS A:433
BINDING SITE FOR RESIDUE PT A 919
15
BC6
SOFTWARE
FAD A:902
BINDING SITE FOR RESIDUE MG A 924
16
BC7
SOFTWARE
ASP A:177
BINDING SITE FOR RESIDUE MG A 926
17
BC8
SOFTWARE
GLY B:67 , ALA B:73 , MET B:74 , LEU B:79 , THR B:81 , TYR B:99 , MET B:101 , TRP B:155 , VAL B:156 , LEU B:173 , SER B:174 , GLN B:175 , HIS B:176 , GLN B:182
BINDING SITE FOR RESIDUE HEM B 901
18
BC9
SOFTWARE
GLY B:236 , GLY B:238 , ALA B:239 , GLY B:240 , ILE B:258 , GLU B:259 , LYS B:260 , TRP B:295 , MET B:309 , GLY B:311 , CYS B:312 , VAL B:313 , GLY B:316 , GLY B:317 , ASN B:321 , ALA B:322 , LEU B:324 , ALA B:439 , VAL B:440 , ALA B:480 , GLY B:481 , ASN B:699 , ASP B:736 , ALA B:737 , ASN B:747 , PRO B:748 , THR B:749 , ILE B:752
BINDING SITE FOR RESIDUE FAD B 902
19
CC1
SOFTWARE
ASN B:119 , HIS B:122 , THR B:124 , SER B:355
BINDING SITE FOR RESIDUE NAG B 903
20
CC2
SOFTWARE
GLY A:461 , MAN A:910 , ASN B:278
BINDING SITE FOR RESIDUE NAG B 904
21
CC3
SOFTWARE
ASN B:400 , ARG B:401
BINDING SITE FOR RESIDUE NAG B 905
22
CC4
SOFTWARE
LYS B:497 , LYS B:504 , ASN B:515
BINDING SITE FOR RESIDUE NAG B 906
23
CC5
SOFTWARE
ASN B:541
BINDING SITE FOR RESIDUE NAG B 907
24
CC6
SOFTWARE
ASN B:555 , THR B:557
BINDING SITE FOR RESIDUE NAG B 908
25
CC7
SOFTWARE
NAG A:904 , THR B:222 , ASN B:460 , GLY B:461 , TYR B:463
BINDING SITE FOR RESIDUE MAN B 909
26
CC8
SOFTWARE
THR B:226
BINDING SITE FOR RESIDUE MAN B 910
27
CC9
SOFTWARE
LYS B:273
BINDING SITE FOR RESIDUE PT B 915
28
DC1
SOFTWARE
LYS B:433
BINDING SITE FOR RESIDUE PT B 917
29
DC2
SOFTWARE
THR B:634
BINDING SITE FOR RESIDUE MG B 919
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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]
Atom Selection
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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