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(-) Description

Title :  CRYSTAL STRUCTURE OF BRD2(BD2) MUTANT IN FREE FORM
 
Authors :  C. Tallant, M. Baud, E. Lin-Shiao, D. Y. Chirgadze, A. Ciulli
Date :  19 May 14  (Deposition) - 29 Oct 14  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Bromodomain-Containing Protein 2, Kiaa9001, Ring3, Transcription Regulation, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Baud, E. Lin-Shiao, T. Cardote, C. Tallant, A. Pschibul, K. H. Chan, M. Zengerle, J. R. Garcia, T. T. Kwan, F. M. Ferguson, A. Ciulli
Chemical Biology. A Bump-And-Hole Approach To Engineer Controlled Selectivity Of Bet Bromodomain Chemical Probes.
Science V. 346 638 2014
PubMed-ID: 25323695  |  Reference-DOI: 10.1126/SCIENCE.1249830

(-) Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA
    Expression System Strain: BL21(DE3) ROSETTA
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 344-455
    Gene: BRD2, KIAA9001, RING3
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: O27.1.1, REALLY INTERESTING NEW GENE 3 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:371 , PHE A:372 , CYS A:425 , GOL A:502 , HOH A:603 , HOH A:614BINDING SITE FOR RESIDUE ACT A 501
2AC2SOFTWARELEU A:381 , TYR A:428 , ASN A:429 , ACT A:501 , HOH A:644 , HOH A:654BINDING SITE FOR RESIDUE GOL A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QEU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QEU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QEU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QEU)

(-) Exons   (0, 0)

(no "Exon" information available for 4QEU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 4qeu A 344 GKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGAHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 455
                                   353       363       373       383       393       403       413       423       433       443       453
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QEU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QEU)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  4qeu
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  BRD2_HUMAN | P25440
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRD2_HUMAN | P25440: 1x0j 2dvq 2dvr 2dvs 2dvv 2e3k 2g4a 2ydw 2yek 3aqa 3oni 4a9e 4a9f 4a9h 4a9i 4a9j 4a9m 4a9n 4a9o 4akn 4alg 4alh 4j1p 4mr5 4mr6 4qev 4qew 4uyf 4uyg 4uyh 5bt5 5dfb 5dfc 5dfd 5dw1 5ek9 5hel 5hem 5hen 5hfq 5ibn 5ig6 5u5s 5uew

(-) Related Entries Specified in the PDB File

4qeo 4qep