5DFC - JenaLib

Title :   CRYSTAL STRUCTURE OF BRD2(BD2) W370F MUTANT WITH LIGAND I-BET 762 BOUND

Authors :   C. Tallant, M. Baud, E. Lin-Shiao, D. Y. Chirgadze, A. Ciulli

Date :   26 Aug 15 (Deposition) - 11 Nov 15 (Release) - 09 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Transcription Factors, Bet Bromodomains, Protein Mutation Engineering, Molecular Probes, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. G. Baud, E. Lin-Shiao, M. Zengerle, C. Tallant, A. Ciulli
New Synthetic Routes To Triazolo-Benzodiazepine Analogues: Expanding The Scope Of The Bump-And-Hole Approach For Selective Bromo And Extra-Terminal (Bet) Bromodomain Inhibition.
J. Med. Chem. V. 59 1492 2016
PubMed-ID: 26367539 | Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01135

Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 344-455
	Gene	:	BRD2, KIAA9001, RING3
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	O27.1.1,REALLY INTERESTING NEW GENE 3 PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:368 , LYS A:402 , ASP A:407 , MET A:438 , LYS A:441 , HOH A:605 , HOH A:641	binding site for residue GOL A 501
2	AC2	SOFTWARE	SER A:347 , LYS A:351 , ASP A:385 , GLU A:404 , TYR A:428 , ASN A:429 , EAM A:503 , HOH A:650	binding site for residue 2PE A 502
3	AC3	SOFTWARE	PRO A:371 , LEU A:383 , ASN A:429 , VAL A:435 , MET A:438 , 2PE A:502 , HOH A:606 , HOH A:611 , HOH A:626	binding site for residue EAM A 503
4	AC4	SOFTWARE	ARG A:419 , HOH A:637	binding site for residue NI A 504

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5dfc A 346 LSEQLKHCNGILKELLSKKHAAYAFPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMP 454
                                   355       365       375       385       395       405       415       425       435       445

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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	Cis Peptide Bonds
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	5dfc
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Description