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(-) Description

Title :  CRYSTAL STRUCTURE OF BRD2(BD2) W370F MUTANT WITH LIGAND I-BET 762 BOUND
 
Authors :  C. Tallant, M. Baud, E. Lin-Shiao, D. Y. Chirgadze, A. Ciulli
Date :  26 Aug 15  (Deposition) - 11 Nov 15  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcription Factors, Bet Bromodomains, Protein Mutation Engineering, Molecular Probes, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. G. Baud, E. Lin-Shiao, M. Zengerle, C. Tallant, A. Ciulli
New Synthetic Routes To Triazolo-Benzodiazepine Analogues: Expanding The Scope Of The Bump-And-Hole Approach For Selective Bromo And Extra-Terminal (Bet) Bromodomain Inhibition.
J. Med. Chem. V. 59 1492 2016
PubMed-ID: 26367539  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01135

(-) Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 2
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPNIC28-BSA4
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentRESIDUES 344-455
    GeneBRD2, KIAA9001, RING3
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymO27.1.1,REALLY INTERESTING NEW GENE 3 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2EAM1Ligand/Ion2-[(4S)-6-(4-CHLOROPHENYL)-8-METHOXY-1-METHYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]-N-ETHYLACETAMIDE
3GOL1Ligand/IonGLYCEROL
4NI1Ligand/IonNICKEL (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:368 , LYS A:402 , ASP A:407 , MET A:438 , LYS A:441 , HOH A:605 , HOH A:641binding site for residue GOL A 501
2AC2SOFTWARESER A:347 , LYS A:351 , ASP A:385 , GLU A:404 , TYR A:428 , ASN A:429 , EAM A:503 , HOH A:650binding site for residue 2PE A 502
3AC3SOFTWAREPRO A:371 , LEU A:383 , ASN A:429 , VAL A:435 , MET A:438 , 2PE A:502 , HOH A:606 , HOH A:611 , HOH A:626binding site for residue EAM A 503
4AC4SOFTWAREARG A:419 , HOH A:637binding site for residue NI A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DFC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DFC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DFC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DFC)

(-) Exons   (0, 0)

(no "Exon" information available for 5DFC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5dfc A 346 LSEQLKHCNGILKELLSKKHAAYAFPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMP 454
                                   355       365       375       385       395       405       415       425       435       445         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DFC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DFC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DFC)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRD2_HUMAN | P254401x0j 2dvq 2dvr 2dvs 2dvv 2e3k 2g4a 2ydw 2yek 3aqa 3oni 4a9e 4a9f 4a9h 4a9i 4a9j 4a9m 4a9n 4a9o 4akn 4alg 4alh 4j1p 4mr5 4mr6 4qeu 4qev 4qew 4uyf 4uyg 4uyh 5bt5 5dfb 5dfd 5dw1 5ek9 5hel 5hem 5hen 5hfq 5ibn 5ig6 5u5s 5uew

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5DFC)